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UGENE-4985. Wrong error message is shown when trying to open deleted file (#333)

* UGENE-4985. Wrong error message is shown when trying to open deleted file

Fixed. Added GUI test

* UGENE-4985. Wrong error message is shown when trying to open deleted file

Fixed extra spaces

* UGENE-4985. Wrong error message is shown when trying to open deleted

file

Changes by review

Co-authored-by: Evelina Biserova <biserova@unipro.ru>

UGENE-7177. Disable 'deprecated-declarations' warnings (#334)

* UGENE-7177. Disable 'deprecated-declarations' warnings

* Fix the last warning in Stockholm format

Fix the last warning in Stockholm format

UGENE-7176. Fix flaky GUITest_regression_scenarios_test_2352 (#332)

* UGENE-7176. Fix flaky GUITest_regression_scenarios_test_2352

* UGENE-7176. More cleanup

* Remove GT_METHOD_NAME defines around trivial methods that never use GT_CHECK

UGENE-6862. The "Filter SAM/BAM" element doesn't save parameters values Fix GUI test

Merge branch 'master' of https://github.com/ugeneunipro/ugene into UGENE-7139

UGENE-7156 Replace the all macOS-define macros with Q_OS_DARWIN (#322)

    • -1
    • +1
    /src/corelibs/U2Core/src/globals/Theme.h
    • -2
    • +2
    /src/corelibs/U2Core/src/globals/global.h
    • -1
    • +1
    /src/corelibs/U2Gui/src/Notification.cpp
    • -1
    • +1
    /src/corelibs/U2Gui/src/util/U2FileDialog.cpp
  1. … 82 more files in changeset.
Remove GT_METHOD_NAME defines around trivial methods that never use GT_CHECK

UGENE-7177. Disable 'deprecated-declarations' warnings

UGENE-7172. Port MSF document format to IOAdapter text streams framework (#329)

* UGENE-7172. Port MSF document format to IOAdapter text streams framework

* UGENE-7172. Comments cleanup

* UGENE-7172. Comments cleanup

* UGENE-7172. Better documentation & code cleanup

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    • +110
    /src/corelibs/U2Formats/src/MSFFormat.cpp
    • -9
    • +7
    /src/corelibs/U2Formats/src/MSFFormat.h
UGENE-7174. Change ugene.net/wiki to doc.ugene.net/wiki in code (#330)

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    • +2
    /src/corelibs/U2Gui/src/util/HelpButton.cpp
UGENE-4985. Wrong error message is shown when trying to open deleted file Changes by review

UGENE-7139. Crash in SearchQualifierDialog.cpp:61 1. Reverted the previous commit 2. FindQulifierTask moved to SearchQualifier without inheriting from Task 3. Minor cleaning in moved code

UGENE-7176. More cleanup

UGENE-7176. Fix flaky GUITest_regression_scenarios_test_2352

unused lines

UGENE-4177 Phylogenetic tree color changes unexpectedly

UGENE-6862. The "Filter SAM/BAM" element doesn't save parameters values

It is required that with each click on the checkbox, the data is

committed to the model. For this,

`ComboBoxWithChecksWidget::si_update(QWidget *)` was created. After the

signal connection, UGENE began to crash, so the code for creating the

model/view was refactored: `delete model` was removed.

Added GUI tests

UGENE-4985. Wrong error message is shown when trying to open deleted file Fixed extra spaces

UGENE-4985. Wrong error message is shown when trying to open deleted file Fixed. Added GUI test

UGENE-6963 review fix 3

UGENE-7174. Change ugene.net/wiki to doc.ugene.net/wiki in code

    • -2
    • +2
    /src/corelibs/U2Gui/src/util/HelpButton.cpp
UGENE-7172. Better documentation & code cleanup

Merge pull request #325 from ugeneunipro/UGENE-7148

UGENE-7148. "Recent files" list has been cleaned after update

UGENE-6963 review fix 2

UGENE-6963 GUI test review fix

UGENE-6963 review fix

UGENE-7172. Comments cleanup

    • -1
    • +1
    /src/corelibs/U2Formats/src/MSFFormat.cpp
UGENE-7172. Comments cleanup

UGENE-7172. Port MSF document format to IOAdapter text streams framework

    • -177
    • +111
    /src/corelibs/U2Formats/src/MSFFormat.cpp
    • -9
    • +7
    /src/corelibs/U2Formats/src/MSFFormat.h