doc_format

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Tests are reorganized
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    ./bed/write/valid_input/test_0004.xml
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Fix XML tests
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    ./gff/joined_annotations/test_0001.xml
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    ./nexus/sequence/alphabet/test_0004.xml
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Fix test for UGENE-4630
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    ./fastq/broken/test_0001.xml
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    ./fastq/broken/test_0002.xml
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    ./fastq/broken/test_0003.xml
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    ./fastq/broken/test_0004.xml
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    ./fastq/broken/test_0005.xml
tests for

UGENE-4630 - Opening of FASTQ file with invalid lines

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    ./fastq/test_0010.xml
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UGENE-4977: tests modification
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    ./embl/sequence/seqpart/test_0004.xml
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UGENE-5190 UGENE crashes on opening GFF file tests and data
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UGENE-5160: fixed a test
UGENE-5160 Error importing GenBank file from Ensembl (BAC_RP11-165B4.gb) upgrade test
Test update
UGENE-5160 Error importing GenBank file from Ensembl (BAC_RP11-165B4.gb) xml test added
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    ./genbank/test_0008.xml
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remove old test
tests for

UGENE-4906

Incosistent alphabet deriving for alignments: pasting to MSA

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UGENE-4912 PDB tests fix
UGENE-4628 tests fix: Opening of BED file with invalid lines
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UGENE-4564: changed the test for warning message
UGENE-4564: changed warning message [2]
UGENE-4564: changed warning message
UGENE-4564: added XML tests
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UGENE-4455: fixed the tests [2]
XML tests fix
Test fix
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Xml test for BED(UGENE-3304) and a few modifications in old ones
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    ./bed/valid_input/test_0012.xml
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win precommit fix
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    ./dot_prepended_filenames/test_0001.xml
Precommit test fix
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    ./dot_prepended_filenames/test_0001.xml
UGENE-3636: ACE format tests were added
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    ./ace/negative/test_0020.xml
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    ./dot_prepended_filenames/test_0001.xml
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    ./ace/negative/test_0021.xml
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    ./ace/negative/test_0022.xml
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    ./ace/negative/test_0023.xml
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    ./ace/negative/test_0024.xml
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    ./ace/negative/test_0025.xml
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    ./ace/negative/test_0026.xml
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    ./ace/negative/test_0016.xml
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    ./ace/negative/test_0027.xml
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    ./ace/negative/test_0017.xml
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    ./ace/negative/test_0028.xml
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    ./ace/negative/test_0018.xml
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    ./ace/negative/test_0029.xml
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    ./ace/negative/test_0019.xml
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Xml tests for BED, GFF, GTF formats
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    ./gff/negative/test_0010.xml
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    ./gff/negative/test_0008.xml
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    ./gff/negative/test_0009.xml
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    ./gtf/valid_input/test_0007.xml
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Test update
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UGENE-3218: automatic XML test
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    ./genbank/annotations/location/test_0010.xml
Added 2 tests for newick format
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UGENE-3505 and UGENE-3507 XML tests
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    ./position_weight_matrix/negative/test_0001.xml
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    ./position_weight_matrix/negative/test_0002.xml
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