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  1. UGENE
  2. UGENE-3324

Sanger reads quality control and alignment

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    Details

    • Epic Name:
      Sanger
    • Sprint:
      DEV-29/01/2015, DEV-12/02/2015
    • Affect Type:
      Userdefined

      Description

      Think on how to improve the following procedure:

      1. A region is sequenced with Sanger. There are several ABI files for it. The reads are shifted and some of them are reversed.
      2. The quality of ends of the regions is poor, so the ends of the reads must be trimmed.
      3. Then the reads must be aligned. The direction of the reads must be taken into account.

      See also: http://ugene.unipro.ru/forum/YaBB.pl?num=1406104444

        Attachments

          Issue Links

          relates to

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. UGENE-5582 The second stage of the Sanger Reads Editor development

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3251 Chromatograms longer than sequences

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3954 New WD element: align Sanger reads to a reference

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3958 Add WD sample for Sanger reads analysis

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              Unassigned
              Reporter:
              oigl Olga Golosova
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: