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  1. UGENE
  2. UGENE-6392

'Align sequence to alignment' problems

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Environment:

      Win 10

    • Affect Type:
      Userdefined

      Description

      There is some problems with 'Align sequence to alignment' feature:
      1. In case of aligning short sequence to big alignment with MAFFT aligner we got error:

      [16:43:30] 'Load sequences and add to alignment task' task failed: Subtask {Align sequences to alignment task} is failed: Can not remove files from temporary folder.
      

      Steps to reproduce:
      Open file _common_data\clustal\big.aln
      And and use next sequence for 'Align sequence to alignment' action _common_data\fasta\short.fa

      2. Also built-in aligner doing this alignment job without any problems.
      We need to change aligner selection strategy which aligner should be used according to alignment size. Or just try to run built in aligner if MAFFT can't align sequence on given alignment.

      Details should be discussed.

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            Assignee:
            Unassigned
            Reporter:
            kir Kirill Rasputin
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: