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  1. UGENE
  2. UGENE-6400

"Map Sanger reads to reference" algorithm finishes with an unclear error if input data are huge

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    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Select "Tools" -> "Sanger data analysis -> "Map reads to reference..." in the main menu.
      2. Set "data/samples/FASTA/human_T1.fa" as reference.
      3. Set "data/samples/FASTA/human_T1.fa" as read.
      4. Click "Map" button.
        Current result: the task fails with the following error:

        An error occurred. Process is not finished successfully.

      I suspect that the cmdline UGENE launched for calculations crashes during the Smith-Waterman aligning of these huge data. There are check for available memory in other places where the algorithm is used, e.g. pairwise alignment in the Alignment Editor. The same check should be added to the reads mapping algorithm.

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            Assignee:
            Unassigned
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
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              Created:
              Updated:
              Resolved: