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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: 1.32
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Fix Version/s: None
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Component/s: Basic-Nucl
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Affect Type:Userdefined
Scenario:
- Select "Tools" -> "Sanger data analysis -> "Map reads to reference..." in the main menu.
- Set "data/samples/FASTA/human_T1.fa" as reference.
- Set "data/samples/FASTA/human_T1.fa" as read.
- Click "Map" button.
Current result: the task fails with the following error:An error occurred. Process is not finished successfully.
I suspect that the cmdline UGENE launched for calculations crashes during the Smith-Waterman aligning of these huge data. There are check for available memory in other places where the algorithm is used, e.g. pairwise alignment in the Alignment Editor. The same check should be added to the reads mapping algorithm.