Bug

• [UGENE-1793] - Web site: Wrong information about current version of UGENE
• [UGENE-1826] - Fix snp_effect automatic tests
• [UGENE-1827] - Fix WD custom script worker tests
• [UGENE-1829] - Create proper sequence selection for alignments GUI testing on mac
• [UGENE-1830] - 15 GUI tests fail because of timeout. find out what is wrong and fix them
• [UGENE-1866] - fix gui regression test 1708
• [UGENE-1879] - 6 new tests failed on mac. fix them
• [UGENE-1929] - fix failed linux build
• [UGENE-1957] - Problems with encoding in SW dialog at Ubuntu 10.4
• [UGENE-2005] - Fix failed GUI tests on Linux (8 tests)
• [UGENE-2028] - test bugs. UGENE-1905 and UGENE-1771 need GUI tests
• [UGENE-2098] - Fix assembly view GUI tests WinXP (2 tests)
• [UGENE-2113] - Assign weekly tests, and compose report -12/09/2013
• [UGENE-2129] - Finish ICG Documentation
• [UGENE-2137] - cistrome data and external tools are deleted from test server after nightly testing
• [UGENE-2294] - Correct "External Tools" pages
• [UGENE-2579] - Problems with some external tools
• [UGENE-2679] - External tools hang up UGENE GUI testing
• [UGENE-3013] - Mistakes in Remote BLAST chapter in the documentation
• [UGENE-3497] - Only the first news piece is updated on main web page
• [UGENE-3593] - Obsolete link to the documentation
• [UGENE-3831] - Problems with ace format detecting
• [UGENE-3919] - Update year in file headers

Epic

• [UGENE-1895] - Send intermediate UGENE version to NIAID. This is the forth send.
• [UGENE-1972] - Release 1.12.2
• [UGENE-2176] - NIAID Send5

Task

• [UGENE-1031] - Notifications not working in the forum
• [UGENE-1076] - Configure "Commit builds" on Mac OS X
• [UGENE-1519] - Configure WinXP GUI test server
• [UGENE-1611] - Restructure UGENE components usage report
• [UGENE-1753] - Update GUI and manual test scenarios
• [UGENE-1820] - Fix WD GUI tests
• [UGENE-1825] - Fix automatic tests for NIAID pipelines
• [UGENE-1828] - Write filler for WD startup dialog in GUI-testing
• [UGENE-1845] - Common review 15.08.13
• [UGENE-1846] - Testing of package before sending to NIAID
• [UGENE-1847] - Interview 06.08.2013
• [UGENE-1848] - Test job review 06.08.2013
• [UGENE-1849] - Answer users 06-07.08.2013
• [UGENE-1850] - Fix failed nightly tests on UBUNTU
• [UGENE-1851] - 1.12.1 release check list
• [UGENE-1852] - Assign weekly tests - 08/08/2013
• [UGENE-1853] - 1.12.1 Ubuntu 12.04 release
• [UGENE-1854] - 1.12.1 Ubuntu 12.10 release
• [UGENE-1855] - 1.12.1 Fedora release
• [UGENE-1858] - Investigate WinXP test falling with 'slowing coefficient'
• [UGENE-1861] - Update FishEye to the latest version
• [UGENE-1863] - Install Team Calendar for JIRA
• [UGENE-1864] - Find the cause of release version crash of the Mac OS X 10.8.4
• [UGENE-1870] - Update external tools pack on site
• [UGENE-1871] - Update Xcode on mac to version 4.6.3
• [UGENE-1876] - Fix remote-request and extract-sequence tests (3 tests)
• [UGENE-1877] - Install latest Confluence and bind it with JIRA
• [UGENE-1880] - Fix msa editor GUI tests (2 tests)
• [UGENE-1890] - Content for the article on ICiG-FCP grant
• [UGENE-1893] - Set up the snapshot building on the Mac OS X 10.8.4
• [UGENE-1899] - Upgrate statistic gathering scripts from JIRA
• [UGENE-1900] - Write short info about distributed compilation systems in UGENE
• [UGENE-1902] - Check BioUML service if internal mysql connection is closed by timeout
• [UGENE-1904] - Assign weekly tests - 15/08/2013
• [UGENE-1907] - Create UGENE tools map
• [UGENE-1912] - Give answers on our forum
• [UGENE-1913] - Install distcc, ccache and configure distcc distributed Linux builds
• [UGENE-1914] - GUI Tests map in Confluence
• [UGENE-1917] - Clean old artifacts, restart Teamcity server and mail Denis to buy new HDD on teamcity server
• [UGENE-1920] - Install UGENE and BioUML in Institute of Cytology and Genetics
• [UGENE-1922] - Move windows distributed build service to i7 computer
• [UGENE-1923] - Install Crucible for JIRA for code review
• [UGENE-1928] - Reconfigure Mac OS X build server.
• [UGENE-1932] - fix call variants tests
• [UGENE-1933] - Fix tuxedo tests
• [UGENE-1941] - Create pipelines (scenarios) for ICIG-FCP grant
• [UGENE-1942] - Content for the article on ICiG-FCP grant
• [UGENE-1943] - Configure build agent on user's PC
• [UGENE-1945] - write xml test for new tuxedo paired reads scheme
• [UGENE-1947] - Set up backup service for JIRA/Confluence/Fisheye
• [UGENE-1949] - Fix cmdline tests for external tools (3 tests)
• [UGENE-1951] - fix linux gui tests
• [UGENE-1955] - Create the chapter "Работа с багами"
• [UGENE-1975] - Release 1.12.2 1-18 points
• [UGENE-1976] - Release 1.12.2 Ubuntu 12.04
• [UGENE-1977] - Create VM with Ubuntu 13.04
• [UGENE-1978] - Release 1.12.2 Ubuntu 12.10
• [UGENE-1979] - Release 1.12.2 Ubuntu 13.04
• [UGENE-1980] - Release 1.12.2 Fedora
• [UGENE-1981] - Release 1.12.2 checklist
• [UGENE-1983] - Release 1.12.2 forum message
• [UGENE-1990] - WinXP GUI test server investigate massive failing of tests
• [UGENE-1991] - Update script for gathering tests info for weekly report
• [UGENE-1992] - Improve server side of BioUML worker to run WD scheme selected by user
• [UGENE-1995] - Create documentation for platform-independent GUI-testing api
• [UGENE-1997] - Project Documentation common updates
• [UGENE-1998] - GUI tests map updates
• [UGENE-2000] - Find out the way about how to work with Gene networks in BioUML
• [UGENE-2001] - Describe test methods for "SNP Effect" pipeline
• [UGENE-2008] - Find out the way about how to highlight damaged gene areas in gene networks
• [UGENE-2016] - Add new worker to BioUML to analyze gene network via SNP annotation results
• [UGENE-2017] - Test 1.12.2 windows release builds
• [UGENE-2018] - Restore Winxp gui test server from backup
• [UGENE-2019] - Create the chapter "Руководство по выпуску релиза: Fedora"
• [UGENE-2022] - Documentation for ICG pipelines
• [UGENE-2023] - Upgrade UGENE tools map
• [UGENE-2025] - Write some content to "The system programmer manual" for ICIG grant
• [UGENE-2027] - Linux nightly testing failed. Find reason, fix or ignore bad tests
• [UGENE-2029] - Fill the information about 20 terms in the molecular biology primer
• [UGENE-2034] - Compile materials for seminar "Introduction to UGENE"
• [UGENE-2035] - Investigate of the possibility to write UGENE manuals in confluence
• [UGENE-2037] - Find data for each ICG scenario
• [UGENE-2041] - Assign weekly tests, and compose report - 29/08/2013
• [UGENE-2042] - GUI testing: handle application crash window on WINXP
• [UGENE-2045] - Create an "easy start" instruction for mac developers
• [UGENE-2066] - Make an analysis report of DNANexus
• [UGENE-2067] - Write UGENE Quick Start Guide for BioLinux
• [UGENE-2085] - Some tools doesn't work on the ubuntu test server
• [UGENE-2095] - Switch on xml-tests
• [UGENE-2097] - Assign weekly tests, and compose report - 05/09/2013
• [UGENE-2110] - Find an existing test or write new for the UGENE-1599
• [UGENE-2118] - Common review 05.09.13-12.09.13
• [UGENE-2119] - Move the WD documentation to confluence
• [UGENE-2141] - Reconfigure build scripts for new tests location
• [UGENE-2177] - Test packages NIAID Send4
• [UGENE-2178] - create test map for 10 plugins
• [UGENE-2179] - Fix UGENE building failed on WINXP server
• [UGENE-2180] - create test map for 10 plugins(1)
• [UGENE-2182] - DAS testing and refining before NIAID send4
• [UGENE-2184] - Some tools don't work on Ubuntu
• [UGENE-2185] - Improvenments of the Project Documentation
• [UGENE-2194] - create several GUI-testing suites
• [UGENE-2201] - Outdated copyright on website
• [UGENE-2214] - create 10 GUI tests
• [UGENE-2215] - create test map for 10 plugins(2)
• [UGENE-2218] - Create initial realization of random-clicking test for a specified time
• [UGENE-2221] - Improve the Quick Start Guide
• [UGENE-2222] - Update the WD documentation as a result of the weekly review
• [UGENE-2231] - do some minor improvements of GUI framework
• [UGENE-2239] - MSA workshop plan discussion
• [UGENE-2240] - Update and move QSG to the web site
• [UGENE-2242] - Release 1.12.3 Ubuntu 12.04
• [UGENE-2243] - Release 1.12.3 Ubuntu 12.10
• [UGENE-2244] - Release 1.12.3 Ubuntu 13.04
• [UGENE-2245] - Release 1.12.3 Fedora
• [UGENE-2246] - Release 1.12.3 checklist
• [UGENE-2247] - Release 1.12.3 forum message
• [UGENE-2249] - Release 1.12.3
• [UGENE-2250] - Release 1.12.3. Check for MAC
• [UGENE-2251] - Release 1.12.3. Check for Linux
• [UGENE-2252] - Release 1.12.3. Check for Windows
• [UGENE-2253] - Set in tracker that new version released.
• [UGENE-2254] - Complete test map for plugins
• [UGENE-2272] - Fix nightly pipelines tests (~60 tests)
• [UGENE-2273] - Fix nightly external tool test tests (~20 tests)
• [UGENE-2274] - Split nightly GUI tests
• [UGENE-2278] - Workshop №1
• [UGENE-2279] - WD documentation improvenments
• [UGENE-2291] - Add GUI tests API for notifications
• [UGENE-2296] - Upgrade xml test's driver for repeat finder and add new tests
• [UGENE-2300] - Add documentation about WD samples
• [UGENE-2301] - Update the project documentation
• [UGENE-2302] - Improve the WD samples documentation
• [UGENE-2303] - Workshop 1: tutorial PDF
• [UGENE-2304] - Workshop 1: tutorial plan
• [UGENE-2305] - Workshop 1: presentation
• [UGENE-2319] - Update chapter "Работа с Teamcity"
• [UGENE-2320] - Update the chapter "Статистика по веб-сайту"
• [UGENE-2325] - Update the chapter "Памятка по запуску виртуалок на тестовом Ubuntu сервере"
• [UGENE-2326] - Create chapter "Check/Assertions Framework"
• [UGENE-2336] - Create chapter "Наш форум"
• [UGENE-2345] - Workshops planning
• [UGENE-2346] - WD documentation updates
• [UGENE-2356] - Create the page Презентация №3
• [UGENE-2357] - Create the page Текстовое прохождение семинара №3
• [UGENE-2369] - review GUI tests on linux
• [UGENE-2370] - Ubuntu and Fedora packages on the downloads page
• [UGENE-2412] - Fix 'Issues' block on web site
• [UGENE-2413] - Update Atlassian Crowd
• [UGENE-2414] - create GUI-testing api for WD scripting and name filters
• [UGENE-2416] - Fix failed tests on WinXP GUI test server
• [UGENE-2417] - Macmini build agent doesn't work
• [UGENE-2419] - Write GUI api requested by team
• [UGENE-2434] - Check format detection sutie
• [UGENE-2435] - Add document importing to automatic test API
• [UGENE-2456] - Refactor GTFileDialog
• [UGENE-2483] - switch off crash report window on mac
• [UGENE-2484] - split nightly GUI tests by workspases on linux
• [UGENE-2501] - Fix precommit testing in branch 1.13
• [UGENE-2508] - Rewrite nightly GUI testing script
• [UGENE-2509] - support dependence of test and data directories of x server where suite is run
• [UGENE-2547] - Create an instruction about installing UGENE from PPA on Ubuntu
• [UGENE-2556] - Write GUI testing api for task tree view, cleaning up script elements and color schemes
• [UGENE-2557] - configure ugene-quad-ubuntu parameters for runninig splitted GUI tests
• [UGENE-2564] - fix linux gui tests
• [UGENE-2571] - Mirror UGENE web site
• [UGENE-2574] - Add info about 1.13 podcast episode
• [UGENE-2585] - Remove unused configurations from teamcity
• [UGENE-2587] - Create queue for waiters in GUI tests
• [UGENE-2609] - create GUI testing api for tree view
• [UGENE-2610] - Update GUI testing API methods
• [UGENE-2611] - restore ignored GUI tests which already fixed
• [UGENE-2615] - Add R modules to the UGENE NGS pack
• [UGENE-2617] - Add Rscript installer to the UGENE installer
• [UGENE-2629] - Access to popup menu items by text in GUI tests
• [UGENE-2668] - create code genetation algorithm for popup menus
• [UGENE-2671] - create code genetation algorithm for several types of widgets
• [UGENE-2698] - write algorithm for generation .h file for dialog fillers
• [UGENE-2699] - write algorithm for generation .cpp file for dialog fillers
• [UGENE-2733] - fix gui testing on mac os
• [UGENE-2734] - Restore xml tests for call varints pipeline
• [UGENE-2735] - update external tools on ugene-quad-ubuntu
• [UGENE-2763] - Reformat Download page
• [UGENE-2764] - Restore xml tests for tuxedo pipeline
• [UGENE-2786] - fix nightly .xml tests on Ubuntu
• [UGENE-2790] - Key features page
• [UGENE-2913] - write gui tests for 20 scenarios for msa overview
• [UGENE-2918] - fix 40 failing xml tests
• [UGENE-2919] - update test data for tuxedo on mac
• [UGENE-2920] - improve comparing bed files in tests
• [UGENE-2953] - taking screenshot of timed out GUI tests
• [UGENE-2954] - Improve xml tests ignoring
• [UGENE-2955] - Improve gui tests ignoring
• [UGENE-2958] - set PATH environment variable on windows gui testing agents
• [UGENE-2964] - rewrite BWA xml tests
• [UGENE-2967] - review xml tests
• [UGENE-2973] - Add description of the alphabets into documentation
• [UGENE-2980] - show ignored tests on nightly macos_x32
• [UGENE-2986] - rewrite xml tests suites
• [UGENE-2997] - Describe all features in the Chromatogram Viewer
• [UGENE-3089] - Add the "Bowtie 2" external tool to the win64 external tools pack
• [UGENE-3181] - Add "bigwig" to the external tool pack
• [UGENE-3189] - Create the documentation page about the UGENE Public Storage
• [UGENE-3217] - Describe "Use pattern name" in documentation
• [UGENE-3219] - Split the GUI test to several tests
• [UGENE-3260] - Add description of all podcast episodes to web site
• [UGENE-3338] - Re-create 1.15 documentation spaces
• [UGENE-3347] - Links from key features page
• [UGENE-3349] - Describe exporting sequences with annotations
• [UGENE-3365] - fix 15 windows gui tests
• [UGENE-3367] - Social links on the main web page
• [UGENE-3368] - News about Facebook and VKontake pages
• [UGENE-3369] - gui testing on linux hangs up
• [UGENE-3370] - Add podcast episodes to VKontakte group
• [UGENE-3371] - Use a service to track who is following UGENE on Twitter
• [UGENE-3406] - Publish video podcast episode "Overview in the Alignment Editor"
• [UGENE-3407] - Publish video podcast episode "Tools for Building Phylogenetic Trees"
• [UGENE-3435] - write GUI tests for General msa editor option panel tab
• [UGENE-3438] - Remove bot members from forum
• [UGENE-3499] - UGENE with Qt5 builds in TeamCity
• [UGENE-3524] - Exit from GUI test when error occures
• [UGENE-3530] - fix 11 tests on linux at rev 7760
• [UGENE-3534] - multiple access to color schemes in GUI tests
• [UGENE-3537] - Migrate confluence onto the external server
• [UGENE-3539] - Add one more domain name for internal server
• [UGENE-3540] - Change links for Jira, Fisheye, Subversion on external server
• [UGENE-3541] - Check GA stats for different domain names.
• [UGENE-3543] - Disable confluence, wordpress and forum on internal server
• [UGENE-3546] - Duplicate info about new domain names records on external DNS
• [UGENE-3559] - Some minor fixes in GUI testing
• [UGENE-3567] - Find and fix unisolated tests on windows
• [UGENE-3577] - fix shared db wd tests on mac and linux
• [UGENE-3578] - fix 9 failed tests on mac
• [UGENE-3598] - update expernal tools on ugene-quad-ubuntu
• [UGENE-3599] - setup launching gui tests in 3 suites
• [UGENE-3600] - Problems with events order in shared db gui tests
• [UGENE-3649] - Fill the "using video cards" page with content
• [UGENE-3672] - add needed folder to test database
• [UGENE-3679] - The public database should be upgraded
• [UGENE-3686] - GUI tests API is incorrect
• [UGENE-3854] - Test data for PCR gui test
• [UGENE-3899] - Post-checks in GUI testing can not set test status to "Failed"
• [UGENE-3912] - DAS tests fail on Ubuntu
• [UGENE-3915] - UGENE 1.15.1 for Ubuntu
• [UGENE-3918] - Restore ignored tests
• [UGENE-3934] - GUI testing api for tasks
• [UGENE-3936] - Improve BLAST documentation
• [UGENE-3952] - fastqc tests fail
• [UGENE-3981] - Split regression tests source file
• [UGENE-4094] - Drag and drop does not work on virtual linux desktop
• [UGENE-4155] - qmake error messages

Improvement

• [UGENE-1930] - Documentation about project in confluence
• [UGENE-1952] - Update chapter "Аппаратное обеспечение проекта"
• [UGENE-1953] - New chapter "Visual Assist: плагин для MSVC"
• [UGENE-1956] - Update the chapter "Распределенная компиляция"
• [UGENE-1958] - Update big chapter "Релизы"
• [UGENE-1959] - Update the chapter "Скрипт qmake -project для UGENE"
• [UGENE-1960] - Update the chapter "Автоматическая обработка аварий (crash reports)"
• [UGENE-1961] - Update the chapter "Статистика по веб-сайту" awstat
• [UGENE-1962] - Create the chapter "Статистика по веб-сайту" GA
• [UGENE-1963] - Create the chapter "Статистика по запускам"
• [UGENE-1964] - Create the chapter "Статистика по тестам и багам"
• [UGENE-1965] - Update the chapter "Стиль кодирования"
• [UGENE-1966] - Update the chapter "GUI тестирование"
• [UGENE-1967] - Update the chapter "Тимсити"
• [UGENE-1968] - Update the chapter "External Tools"
• [UGENE-1971] - Create the chapter "Справочник терминов"
• [UGENE-1974] - Create the chapter "Семинары"
• [UGENE-2002] - Update links to the Cistrome tools in Confluence.
• [UGENE-2145] - Change internal links in WD documentation
• [UGENE-2146] - Update images position in WD documentation
• [UGENE-2175] - Improvenments of the WD documentation
• [UGENE-2238] - Improve the WD documentation
• [UGENE-2653] - Window showing info about clicked widgets
• [UGENE-2985] - Editing xml tests files from UGENE
• [UGENE-3337] - Images in the Circular View documentation
• [UGENE-3509] - GUI testing: annotations drag'n'drop does not work

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