[DETAILS][14:36] UGENE initialization started [TRACE][14:36] UGENE run at dir C:/Program Files/Unipro UGENE with parameters C:\Program Files\Unipro UGENE\ugeneui.exe [TRACE][14:36] Active UGENE.ini file : C:/Documents and Settings/oigl/Application Data/Unipro/UGENE.ini [TRACE][14:36] Log view update time 0 millis [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/annotator.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/ball.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/biostruct3d_view.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/bowtie.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/chroma_view.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/circular_view.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/cuda_support.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dna_export.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dna_graphpack.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dna_stat.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dotplot.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/enzymes.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/external_tool_support.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/genome_aligner.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/gor4.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/hmm2.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/hmm3.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/kalign.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/opencl_support.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/orf_marker.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/phylip.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/primer3.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/psipred.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/query_designer.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/remote_blast.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/remote_service.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/repeat_finder.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/sitecon.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/smith_waterman.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/umuscle.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/weight_matrix.plugin [TRACE][14:36] Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/workflow_designer.plugin [TRACE][14:36] List of the plugins to be loaded: [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/repeat_finder.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/sitecon.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/weight_matrix.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/chroma_view.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/external_tool_support.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/genome_aligner.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/remote_blast.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/enzymes.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/cuda_support.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/hmm2.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/kalign.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/orf_marker.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/ball.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/hmm3.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/dna_stat.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/dna_export.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/remote_service.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/opencl_support.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/workflow_designer.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/annotator.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/psipred.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/primer3.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/query_designer.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/umuscle.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/biostruct3d_view.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/phylip.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/dna_graphpack.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/gor4.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/dotplot.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/circular_view.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/smith_waterman.plugin [TRACE][14:36] C:/Program Files/Unipro UGENE/plugins/bowtie.plugin [TRACE][14:36] End of the list [DETAILS][14:36] Registering new task: Loading start up plugins [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum100.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum30.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum35.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum40.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum45.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum50.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum55.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum60.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum62.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum65.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum70.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum75.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum80.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum85.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum90.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosumn.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/dayhoff.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/dna.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/gonnet.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/identity.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/match.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/md_10.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/md_20.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/md_40.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/nuc.4.4.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam10.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam100.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam110.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam120.cdi.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam120.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam130.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam140.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam150.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam160.cdi.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam160.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam170.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam180.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam190.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam20.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam200.cdi.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam200.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam210.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam220.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam230.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam240.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam250.cdi.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam250.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam260.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam270.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam280.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam290.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam30.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam300.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam310.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam320.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam330.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam340.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam350.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam360.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam370.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam380.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam390.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam40.cdi.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam40.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam400.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam410.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam420.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam430.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam440.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam450.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam460.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam470.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam480.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam490.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam50.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam500.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam60.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam70.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam80.cdi.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam80.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam90.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/rna.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/vtml160.txt [DETAILS][14:36] Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/vtml200.txt [DETAILS][14:36] Registering new task: Register 'PluginViewer' service [DETAILS][14:36] Registering new task: Register 'ProjectView' service [INFO][14:36] UGENE started [TRACE][14:36] promoting task {Loading start up plugins} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: bowtie} to 'Prepared' [TRACE][14:36] promoting task {Register 'PluginViewer' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'PluginViewer' service} to 'Prepared' [TRACE][14:36] promoting task {Enable PluginViewer} to 'Prepared' [TRACE][14:36] promoting task {Register 'ProjectView' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'ProjectView' service} to 'Prepared', error 'Required service is not enabled: ProjectView' [TRACE][14:36] promoting task {Loading start up plugins} to 'Running' [TRACE][14:36] promoting task {Add plugin task: bowtie} to 'Running' [TRACE][14:36] promoting task {Register 'PluginViewer' service} to 'Running' [TRACE][14:36] promoting task {Enable 'PluginViewer' service} to 'Running' [TRACE][14:36] promoting task {Enable PluginViewer} to 'Running' [TRACE][14:36] promoting task {Register 'ProjectView' service} to 'Running' [TRACE][14:36] promoting task {Enable 'ProjectView' service} to 'Running', error 'Required service is not enabled: ProjectView' [TRACE][14:36] promoting task {Enable 'ProjectView' service} to 'Finished', error 'Required service is not enabled: ProjectView' [TRACE][14:36] promoting task {Register 'ProjectView' service} to 'Finished' [TRACE][14:36] promoting task {Enable PluginViewer} to 'Finished' [TRACE][14:36] promoting task {Enable 'PluginViewer' service} to 'Finished' [TRACE][14:36] promoting task {Register 'PluginViewer' service} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: bowtie} to 'Finished' [TRACE][14:36] Unregistering task: Register 'PluginViewer' service [TRACE][14:36] Deleting task: Enable PluginViewer [TRACE][14:36] Deleting task: Enable 'PluginViewer' service [TRACE][14:36] Deleting task: Register 'PluginViewer' service [TRACE][14:36] Unregistering task: Register 'ProjectView' service [TRACE][14:36] Deleting task: Enable 'ProjectView' service [TRACE][14:36] Deleting task: Register 'ProjectView' service [TRACE][14:36] promoting task {Add plugin task: smith_waterman} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: smith_waterman} to 'Running' [TRACE][14:36] Registering classic SW implementation [TRACE][14:36] Registering SSE2 SW implementation [TRACE][14:36] promoting task {Add plugin task: smith_waterman} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: circular_view} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: circular_view} to 'Running' [TRACE][14:36] promoting task {Add plugin task: circular_view} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: dotplot} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: dotplot} to 'Running' [TRACE][14:36] promoting task {Add plugin task: dotplot} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: gor4} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: gor4} to 'Running' [TRACE][14:36] promoting task {Add plugin task: gor4} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: dna_graphpack} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: dna_graphpack} to 'Running' [TRACE][14:36] promoting task {Add plugin task: dna_graphpack} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: phylip} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: phylip} to 'Running' [TRACE][14:36] promoting task {Add plugin task: phylip} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: biostruct3d_view} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: biostruct3d_view} to 'Running' [TRACE][14:36] promoting task {Add plugin task: biostruct3d_view} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: umuscle} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: umuscle} to 'Running' [TRACE][14:36] promoting task {Add plugin task: umuscle} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: query_designer} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: query_designer} to 'Running' [DETAILS][14:36] Registering new task: Register 'Query Designer' service [TRACE][14:36] promoting task {Add plugin task: query_designer} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: primer3} to 'Prepared' [TRACE][14:36] promoting task {Register 'Query Designer' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'Query Designer' service} to 'Prepared' [TRACE][14:36] promoting task {Load query samples} to 'Prepared' [TRACE][14:36] promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: primer3} to 'Running' [TRACE][14:36] promoting task {Register 'Query Designer' service} to 'Running' [TRACE][14:36] promoting task {Enable 'Query Designer' service} to 'Running' [TRACE][14:36] promoting task {Load query samples} to 'Running' [TRACE][14:36] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:36] promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Running' [TRACE][14:36] promoting task {Add plugin task: primer3} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: psipred} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: psipred} to 'Running' [DETAILS][14:36] Loading scheme from file: C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql [TRACE][14:36] promoting task {Add plugin task: psipred} to 'Finished' [TRACE][14:36] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:36] promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: annotator} to 'Prepared' [TRACE][14:36] promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: annotator} to 'Running' [TRACE][14:36] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:36] promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Running' [TRACE][14:36] promoting task {Add plugin task: annotator} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: workflow_designer} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: workflow_designer} to 'Running' [DETAILS][14:36] Loading scheme from file: C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql [DETAILS][14:36] Registering new task: Register 'Workflow Designer' service [TRACE][14:36] promoting task {Add plugin task: workflow_designer} to 'Finished' [TRACE][14:36] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:36] promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Finished' [TRACE][14:36] promoting task {Load query samples} to 'Finished' [TRACE][14:36] promoting task {Enable 'Query Designer' service} to 'Finished' [TRACE][14:36] promoting task {Register 'Query Designer' service} to 'Finished' [TRACE][14:36] Unregistering task: Register 'Query Designer' service [TRACE][14:36] Deleting task: Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql [TRACE][14:36] Deleting task: Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql [TRACE][14:36] Deleting task: Load query samples [TRACE][14:36] Deleting task: Enable 'Query Designer' service [TRACE][14:36] Deleting task: Register 'Query Designer' service [TRACE][14:36] promoting task {Add plugin task: opencl_support} to 'Prepared' [TRACE][14:36] promoting task {Register 'Workflow Designer' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'Workflow Designer' service} to 'Prepared' [TRACE][14:36] promoting task {Load workflow samples} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: opencl_support} to 'Running' [TRACE][14:36] promoting task {Register 'Workflow Designer' service} to 'Running' [TRACE][14:36] promoting task {Enable 'Workflow Designer' service} to 'Running' [TRACE][14:36] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:36] promoting task {Load workflow samples} to 'Running' [DETAILS][14:36] Loading OPENCL driver library [DETAILS][14:36] Initializing OpenCL [DETAILS][14:36] Number of OpenCL platforms: 1 [DETAILS][14:36] Number of OpenCL devices: 1 [INFO][14:36] Registering OpenCL-enabled GPU: NVIDIA Corporation GeForce 9800 GT, global mem: 511 Mb, local mem: 16 Kb, max compute units: 14, max work group size: 512, max frequency: 1375 Hz [TRACE][14:36] promoting task {Add plugin task: opencl_support} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: remote_service} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: remote_service} to 'Running' [TRACE][14:36] promoting task {Add plugin task: remote_service} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: dna_export} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: dna_export} to 'Running' [DETAILS][14:36] Registering new task: Register 'DNA export service' service [TRACE][14:36] promoting task {Add plugin task: dna_export} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: dna_stat} to 'Prepared' [TRACE][14:36] promoting task {Register 'DNA export service' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'DNA export service' service} to 'Prepared', error 'Required service is not enabled: DNA export service' [TRACE][14:36] promoting task {Add plugin task: dna_stat} to 'Running' [TRACE][14:36] promoting task {Register 'DNA export service' service} to 'Running' [TRACE][14:36] promoting task {Enable 'DNA export service' service} to 'Running', error 'Required service is not enabled: DNA export service' [TRACE][14:36] promoting task {Enable 'DNA export service' service} to 'Finished', error 'Required service is not enabled: DNA export service' [TRACE][14:36] promoting task {Register 'DNA export service' service} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: dna_stat} to 'Finished' [TRACE][14:36] Unregistering task: Register 'DNA export service' service [TRACE][14:36] Deleting task: Enable 'DNA export service' service [TRACE][14:36] Deleting task: Register 'DNA export service' service [TRACE][14:36] promoting task {Add plugin task: hmm3} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: hmm3} to 'Running' [TRACE][14:36] promoting task {Add plugin task: hmm3} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: ball} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: ball} to 'Running' [TRACE][14:36] promoting task {Add plugin task: ball} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: orf_marker} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: orf_marker} to 'Running' [TRACE][14:36] promoting task {Add plugin task: orf_marker} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: kalign} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: kalign} to 'Running' [TRACE][14:36] promoting task {Add plugin task: kalign} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: hmm2} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: hmm2} to 'Running' [TRACE][14:36] promoting task {Add plugin task: hmm2} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: cuda_support} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: cuda_support} to 'Running' [DETAILS][14:36] Loading CUDA driver library [DETAILS][14:36] Initializing CUDA [DETAILS][14:36] Obtaining number of CUDA-enabled devices [DETAILS][14:36] Registering CUDA-enabled GPU: GeForce 9800 GT, id: 0 [TRACE][14:36] promoting task {Add plugin task: cuda_support} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: enzymes} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: enzymes} to 'Running' [TRACE][14:36] promoting task {Add plugin task: enzymes} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: remote_blast} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: remote_blast} to 'Running' [TRACE][14:36] promoting task {Add plugin task: remote_blast} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: genome_aligner} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: genome_aligner} to 'Running' [TRACE][14:36] promoting task {Add plugin task: genome_aligner} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: external_tool_support} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: external_tool_support} to 'Running' [DETAILS][14:36] Registering new task: Register 'External tools support' service [TRACE][14:36] promoting task {Add plugin task: external_tool_support} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: chroma_view} to 'Prepared' [TRACE][14:36] promoting task {Register 'External tools support' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'External tools support' service} to 'Prepared', error 'Required service is not enabled: External tools support' [TRACE][14:36] promoting task {Add plugin task: chroma_view} to 'Running' [TRACE][14:36] promoting task {Register 'External tools support' service} to 'Running' [TRACE][14:36] promoting task {Enable 'External tools support' service} to 'Running', error 'Required service is not enabled: External tools support' [TRACE][14:36] promoting task {Enable 'External tools support' service} to 'Finished', error 'Required service is not enabled: External tools support' [TRACE][14:36] promoting task {Register 'External tools support' service} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: chroma_view} to 'Finished' [TRACE][14:36] Unregistering task: Register 'External tools support' service [TRACE][14:36] Deleting task: Enable 'External tools support' service [TRACE][14:36] Deleting task: Register 'External tools support' service [TRACE][14:36] promoting task {Add plugin task: weight_matrix} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: weight_matrix} to 'Running' [TRACE][14:36] promoting task {Add plugin task: weight_matrix} to 'Finished' [TRACE][14:36] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:36] promoting task {Load workflow samples} to 'Finished' [TRACE][14:36] promoting task {Enable 'Workflow Designer' service} to 'Finished' [TRACE][14:36] promoting task {Register 'Workflow Designer' service} to 'Finished' [TRACE][14:36] Unregistering task: Register 'Workflow Designer' service [TRACE][14:36] Deleting task: Load workflow samples [TRACE][14:36] Deleting task: Enable 'Workflow Designer' service [TRACE][14:36] Deleting task: Register 'Workflow Designer' service [TRACE][14:36] promoting task {Add plugin task: sitecon} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: sitecon} to 'Running' [TRACE][14:36] promoting task {Add plugin task: sitecon} to 'Finished' [TRACE][14:36] promoting task {Add plugin task: repeat_finder} to 'Prepared' [TRACE][14:36] promoting task {Add plugin task: repeat_finder} to 'Running' [TRACE][14:36] promoting task {Add plugin task: repeat_finder} to 'Finished' [DETAILS][14:36] Registering new task: Open project/document [TRACE][14:36] Registering CUDA SW implementation [TRACE][14:36] Registering OpenCL SW implementation [TRACE][14:36] promoting task {Loading start up plugins} to 'Finished' [TRACE][14:36] Unregistering task: Loading start up plugins [TRACE][14:36] Deleting task: Add plugin task: bowtie [TRACE][14:36] Deleting task: Add plugin task: smith_waterman [TRACE][14:36] Deleting task: Add plugin task: circular_view [TRACE][14:36] Deleting task: Add plugin task: dotplot [TRACE][14:36] Deleting task: Add plugin task: gor4 [TRACE][14:36] Deleting task: Add plugin task: dna_graphpack [TRACE][14:36] Deleting task: Add plugin task: phylip [TRACE][14:36] Deleting task: Add plugin task: biostruct3d_view [TRACE][14:36] Deleting task: Add plugin task: umuscle [TRACE][14:36] Deleting task: Add plugin task: query_designer [TRACE][14:36] Deleting task: Add plugin task: primer3 [TRACE][14:36] Deleting task: Add plugin task: psipred [TRACE][14:36] Deleting task: Add plugin task: annotator [TRACE][14:36] Deleting task: Add plugin task: workflow_designer [TRACE][14:36] Deleting task: Add plugin task: opencl_support [TRACE][14:36] Deleting task: Add plugin task: remote_service [TRACE][14:36] Deleting task: Add plugin task: dna_export [TRACE][14:36] Deleting task: Add plugin task: dna_stat [TRACE][14:36] Deleting task: Add plugin task: hmm3 [TRACE][14:36] Deleting task: Add plugin task: ball [TRACE][14:36] Deleting task: Add plugin task: orf_marker [TRACE][14:36] Deleting task: Add plugin task: kalign [TRACE][14:36] Deleting task: Add plugin task: hmm2 [TRACE][14:36] Deleting task: Add plugin task: cuda_support [TRACE][14:36] Deleting task: Add plugin task: enzymes [TRACE][14:36] Deleting task: Add plugin task: remote_blast [TRACE][14:36] Deleting task: Add plugin task: genome_aligner [TRACE][14:36] Deleting task: Add plugin task: external_tool_support [TRACE][14:36] Deleting task: Add plugin task: chroma_view [TRACE][14:36] Deleting task: Add plugin task: weight_matrix [TRACE][14:36] Deleting task: Add plugin task: sitecon [TRACE][14:36] Deleting task: Add plugin task: repeat_finder [TRACE][14:36] Deleting task: Loading start up plugins [TRACE][14:36] promoting task {Open project/document} to 'Prepared' [TRACE][14:36] promoting task {Load project} to 'Prepared' [TRACE][14:36] promoting task {Open project/document} to 'Running' [TRACE][14:36] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:36] promoting task {Load project} to 'Running' [DETAILS][14:36] Loading project from: C:/Documents and Settings/oigl/project_tree.uprj [TRACE][14:36] releasing resource: 'Threads':1, state: 0/1000 [DETAILS][14:36] Adding document to the project: C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB [DETAILS][14:36] Adding document to the project: C:/Program Files/Unipro UGENE/data/samples/PDB/1CRN.PDB [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/3INS.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/3QK4.pdb [DETAILS][14:36] Adding document to the project: C:/Program Files/Unipro UGENE/data/samples/CLUSTALW/COI.aln [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1V6C.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1B6Q.pdb [DETAILS][14:36] Adding document to the project: D:/OLD-TRUNK/test/_common_data/pdb/strange_model.pdb [DETAILS][14:36] Adding document to the project: D:/OLD-TRUNK/test/_common_data/pdb/2ZNL.pdb [DETAILS][14:36] Adding document to the project: D:/OLD-TRUNK/test/_common_data/pdb/2JQS.pdb [DETAILS][14:36] Adding document to the project: D:/OLD-TRUNK/test/_common_data/pdb/1O1K.pdb [DETAILS][14:36] Adding document to the project: D:/OLD-TRUNK/test/_common_data/pdb/1MOT.pdb [DETAILS][14:36] Adding document to the project: D:/OLD-TRUNK/test/_common_data/pdb/1FSC.pdb [DETAILS][14:36] Adding document to the project: D:/OLD-TRUNK/test/_common_data/pdb/1CF7.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1G5V.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/3LZT.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1ZNF.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1D57.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1BV7.pdb [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1g9e.pdb [DETAILS][14:36] Adding document to the project: C:/ALL/examples/FASTA/amino.fa [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/Desktop/123.fa [DETAILS][14:36] Adding document to the project: C:/Documents and Settings/oigl/.UGENE_downloaded/1CRN.pdb [DETAILS][14:36] Adding document to the project: C:/Program Files/Unipro UGENE/data/samples/MMDB/1CRN.prt [DETAILS][14:36] Adding document to the project: C:/Program Files/Unipro UGENE/data/samples/MMDB/2JQS.prt [DETAILS][14:36] Adding document to the project: C:/ALL/examples/PDB/1CF7.PDB [INFO][14:36] Project loaded: C:/Documents and Settings/oigl/project_tree.uprj [TRACE][14:36] promoting task {Load project} to 'Finished' [TRACE][14:36] promoting task {Register project} to 'Prepared' [TRACE][14:36] promoting task {Register 'Project' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'Project' service} to 'Prepared' [TRACE][14:36] promoting task {Enable Project} to 'Prepared' [TRACE][14:36] promoting task {Register project} to 'Running' [TRACE][14:36] promoting task {Register 'Project' service} to 'Running' [TRACE][14:36] promoting task {Enable 'Project' service} to 'Running' [TRACE][14:36] promoting task {Enable Project} to 'Running' [TRACE][14:36] promoting task {Enable Project} to 'Finished' [TRACE][14:36] promoting task {Enable 'Project' service} to 'Finished' [TRACE][14:36] promoting task {Register 'Project' service} to 'Finished' [TRACE][14:36] promoting task {Register project} to 'Finished' [TRACE][14:36] promoting task {Open project/document} to 'Finished' [TRACE][14:36] Unregistering task: Open project/document [TRACE][14:36] Deleting task: Load project [TRACE][14:36] Deleting task: Enable Project [TRACE][14:36] Deleting task: Enable 'Project' service [TRACE][14:36] Deleting task: Register 'Project' service [TRACE][14:36] Deleting task: Register project [TRACE][14:36] Deleting task: Open project/document [DETAILS][14:36] Registering new task: Enable 'ProjectView' service [TRACE][14:36] promoting task {Enable 'ProjectView' service} to 'Prepared' [TRACE][14:36] promoting task {Enable ProjectView} to 'Prepared' [TRACE][14:36] promoting task {Enable 'ProjectView' service} to 'Running' [TRACE][14:36] promoting task {Enable ProjectView} to 'Running' [TRACE][14:36] promoting task {Enable ProjectView} to 'Finished' [TRACE][14:36] promoting task {Enable 'ProjectView' service} to 'Finished' [TRACE][14:36] Unregistering task: Enable 'ProjectView' service [TRACE][14:36] Deleting task: Enable ProjectView [TRACE][14:36] Deleting task: Enable 'ProjectView' service [DETAILS][14:36] Registering new task: Enable 'DNA export service' service [TRACE][14:36] promoting task {Enable 'DNA export service' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'DNA export service' service} to 'Running' [TRACE][14:36] promoting task {Enable 'DNA export service' service} to 'Finished' [TRACE][14:36] Unregistering task: Enable 'DNA export service' service [TRACE][14:36] Deleting task: Enable 'DNA export service' service [DETAILS][14:36] Registering new task: Enable 'External tools support' service [TRACE][14:36] promoting task {Enable 'External tools support' service} to 'Prepared' [TRACE][14:36] promoting task {Enable 'External tools support' service} to 'Running' [TRACE][14:36] promoting task {Enable 'External tools support' service} to 'Finished' [TRACE][14:36] Unregistering task: Enable 'External tools support' service [TRACE][14:36] Deleting task: Enable 'External tools support' service [TRACE][14:36] Object to open sequence view: '1CF7 chain 1 sequence' [TRACE][14:36] Object to open sequence view: '1CF7 chain 2 sequence' [TRACE][14:36] Object to open sequence view: '1CF7 chain 3 sequence' [TRACE][14:36] Object to open sequence view: '1CF7 chain 4 sequence' [TRACE][14:36] Object to open sequence view: '1CF7 chain 1 annotation' [TRACE][14:36] Object to open sequence view: '1CF7 chain 2 annotation' [TRACE][14:36] Object to open sequence view: '1CF7 chain 3 annotation' [TRACE][14:36] Object to open sequence view: '1CF7 chain 4 annotation' [TRACE][14:36] Object to open sequence view: '1CF7' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [TRACE][14:36] Document to load: 'C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' [DETAILS][14:36] Registering new task: Open new 'Sequence view' [TRACE][14:36] promoting task {Open new 'Sequence view'} to 'Prepared' [INFO][14:36] Starting {Open new 'Sequence view'} task [DETAILS][14:36] Starting load document from C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB, document format PDB [DETAILS][14:36] resource 'Project Document::C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' is used by 'Load '1CF7.PDB'' [TRACE][14:36] promoting task {Load '1CF7.PDB'} to 'Prepared' [TRACE][14:36] load document:Memory resource 30 [TRACE][14:36] promoting task {Read document: '1CF7.PDB'} to 'Prepared' [TRACE][14:36] promoting task {Open new 'Sequence view'} to 'Running' [TRACE][14:36] promoting task {Load '1CF7.PDB'} to 'Running' [TRACE][14:36] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:36] promoting task {Read document: '1CF7.PDB'} to 'Running' [TRACE][14:36] Start PDB parsing: C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB [TRACE][14:37] PDB file parsing time: 28.734 [TRACE][14:37] Calculating center and max distance... [TRACE][14:37] center: (34.8413,27.5312,21.1675) maxDistFromCenter: 32.0453 [TRACE][14:37] Generating chains annotations... [TRACE][14:37] PDB bonds calculation time: 1.172 [TRACE][14:37] Calculating bonds... [TRACE][14:37] PDB parsing finished: C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB [TRACE][14:37] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:37] promoting task {Read document: '1CF7.PDB'} to 'Finished' [DETAILS][14:37] resource 'Project Document::C:/Program Files/Unipro UGENE/data/samples/PDB/1CF7.PDB' is released by 'Load '1CF7.PDB'' [TRACE][14:37] promoting task {Load '1CF7.PDB'} to 'Finished' [DETAILS][14:37] Registering new task: Auto-annotations update task [DETAILS][14:37] Registering new task: Auto-annotations update task [TRACE][14:37] Adding window: '1CF7.PDB' [TRACE][14:37] BioStruct3D structure rendering time 0.125 s [TRACE][14:37] BioStruct3D structure rendering time 0.016 s [TRACE][14:37] Switching active MDI window from '' to '1CF7.PDB' [TRACE][14:37] Updating active status for 1CF7.PDB [TRACE][14:37] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:37] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:37] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:37] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:37] Updating active status for [3d] 1CF7 [TRACE][14:37] Project view now listens object events in '1CF7.PDB' view [TRACE][14:37] promoting task {Open new 'Sequence view'} to 'Finished' [INFO][14:37] Task {Open new 'Sequence view'} finished [TRACE][14:37] Unregistering task: Open new 'Sequence view' [TRACE][14:37] Deleting task: Read document: '1CF7.PDB' [TRACE][14:37] Deleting task: Load '1CF7.PDB' [TRACE][14:37] Deleting task: Open new 'Sequence view' [TRACE][14:37] promoting task {Auto-annotations update task} to 'Prepared' [TRACE][14:37] promoting task {Find and store enzymes} to 'Prepared' [TRACE][14:37] promoting task {Find Enzymes} to 'Prepared' [TRACE][14:37] promoting task {Auto-annotations update task} to 'Prepared' [TRACE][14:37] promoting task {Find and store enzymes} to 'Prepared' [TRACE][14:37] promoting task {Find Enzymes} to 'Prepared' [TRACE][14:37] promoting task {Auto-annotations update task} to 'Running' [TRACE][14:37] promoting task {Find Enzymes} to 'Running' [TRACE][14:37] promoting task {Find and store enzymes} to 'Running' [TRACE][14:37] promoting task {Auto-annotations update task} to 'Running' [TRACE][14:37] promoting task {Find Enzymes} to 'Running' [TRACE][14:37] promoting task {Find and store enzymes} to 'Running' [TRACE][14:37] BioStruct3D structure rendering time 0.031 s [INFO][14:37] Found 0 restriction sites [TRACE][14:37] promoting task {Find Enzymes} to 'Finished' [INFO][14:37] Found 0 restriction sites [TRACE][14:37] promoting task {Find Enzymes} to 'Finished' [TRACE][14:37] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:37] acquiring resource: 'Threads':1, state: 2/1000 [TRACE][14:37] BioStruct3D structure rendering time 0.015 s [TRACE][14:37] releasing resource: 'Threads':1, state: 1/1000 [TRACE][14:37] promoting task {Find and store enzymes} to 'Finished' [TRACE][14:37] promoting task {Auto-annotations update task} to 'Finished' [TRACE][14:37] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:37] promoting task {Find and store enzymes} to 'Finished' [TRACE][14:37] promoting task {Auto-annotations update task} to 'Finished' [TRACE][14:37] Unregistering task: Auto-annotations update task [TRACE][14:37] Deleting task: Find Enzymes [TRACE][14:37] Deleting task: Find and store enzymes [TRACE][14:37] Deleting task: Auto-annotations update task [TRACE][14:37] Unregistering task: Auto-annotations update task [TRACE][14:37] Deleting task: Find Enzymes [TRACE][14:37] Deleting task: Find and store enzymes [TRACE][14:37] Deleting task: Auto-annotations update task [TRACE][14:37] BioStruct3D structure rendering time 0 s [TRACE][14:37] BioStruct3D structure rendering time 0.015 s [TRACE][14:37] BioStruct3D structure rendering time 0.016 s [TRACE][14:37] BioStruct3D structure rendering time 0.015 s [TRACE][14:37] BioStruct3D structure rendering time 0.016 s [TRACE][14:37] BioStruct3D structure rendering time 0.015 s [TRACE][14:37] BioStruct3D structure rendering time 0.032 s [TRACE][14:37] BioStruct3D structure rendering time 0.015 s [TRACE][14:37] BioStruct3D structure rendering time 0 s [TRACE][14:37] BioStruct3D structure rendering time 0.015 s [TRACE][14:37] BioStruct3D structure rendering time 0.016 s [TRACE][14:37] Window deactivation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:37] Updating active status for 1CF7.PDB [TRACE][14:37] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:37] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:37] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:37] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:37] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:37] Updating active status for [3d] 1CF7 [TRACE][14:37] BioStruct3D structure rendering time 0.015 s [TRACE][14:38] Window activation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:38] Updating active status for 1CF7.PDB [TRACE][14:38] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:38] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:38] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:38] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:38] Updating active status for [3d] 1CF7 [TRACE][14:38] Project view now listens object events in '1CF7.PDB' view [TRACE][14:38] BioStruct3D structure rendering time 0.016 s [TRACE][14:38] BioStruct3D structure rendering time 0.015 s [TRACE][14:38] BioStruct3D structure rendering time 0.016 s [TRACE][14:38] BioStruct3D structure rendering time 0.031 s [TRACE][14:38] BioStruct3D structure rendering time 0.016 s [TRACE][14:38] BioStruct3D structure rendering time 0.016 s [TRACE][14:38] BioStruct3D structure rendering time 0.015 s [TRACE][14:38] BioStruct3D structure rendering time 0.016 s [TRACE][14:38] BioStruct3D structure rendering time 0.031 s [TRACE][14:38] Window deactivation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:38] Updating active status for 1CF7.PDB [TRACE][14:38] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:38] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:38] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:38] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:38] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:38] Updating active status for [3d] 1CF7 [TRACE][14:40] Window activation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:40] Updating active status for 1CF7.PDB [TRACE][14:40] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:40] Updating active status for [3d] 1CF7 [TRACE][14:40] Project view now listens object events in '1CF7.PDB' view [TRACE][14:40] BioStruct3D structure rendering time 0 s [TRACE][14:40] BioStruct3D structure rendering time 0.016 s [TRACE][14:40] Window deactivation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:40] Updating active status for 1CF7.PDB [TRACE][14:40] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:40] Updating active status for [3d] 1CF7 [TRACE][14:40] BioStruct3D structure rendering time 0.016 s [TRACE][14:40] Window activation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:40] Updating active status for 1CF7.PDB [TRACE][14:40] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:40] Updating active status for [3d] 1CF7 [TRACE][14:40] Project view now listens object events in '1CF7.PDB' view [TRACE][14:40] BioStruct3D structure rendering time 0.015 s [TRACE][14:40] BioStruct3D structure rendering time 0.016 s [TRACE][14:40] Window deactivation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:40] Updating active status for 1CF7.PDB [TRACE][14:40] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:40] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:40] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:40] Updating active status for [3d] 1CF7 [TRACE][14:40] BioStruct3D structure rendering time 0.016 s [TRACE][14:40] BioStruct3D structure rendering time 0 s [TRACE][14:41] BioStruct3D structure rendering time 0 s [TRACE][14:41] BioStruct3D structure rendering time 0.016 s [TRACE][14:41] BioStruct3D structure rendering time 0.016 s [TRACE][14:41] BioStruct3D structure rendering time 0.016 s [TRACE][14:41] BioStruct3D structure rendering time 0.016 s [TRACE][14:41] BioStruct3D structure rendering time 0.015 s [TRACE][14:43] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] Window activation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:44] Updating active status for 1CF7.PDB [TRACE][14:44] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:44] Updating active status for [3d] 1CF7 [TRACE][14:44] Project view now listens object events in '1CF7.PDB' view [TRACE][14:44] BioStruct3D structure rendering time 0.016 s [TRACE][14:44] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] BioStruct3D structure rendering time 0 s [TRACE][14:44] BioStruct3D structure rendering time 0.016 s [TRACE][14:44] BioStruct3D structure rendering time 0.016 s [TRACE][14:44] Estimated memory usage: 0 MB [DETAILS][14:44] Registering new task: Molecular surface calculation [TRACE][14:44] acquiring resource: 'Memory':0, state: 30/1536 [TRACE][14:44] promoting task {Molecular surface calculation} to 'Prepared' [TRACE][14:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:44] promoting task {Molecular surface calculation} to 'Running' [TRACE][14:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:44] Number of atoms: 1798, number of faces: 11242 [TRACE][14:44] Used memory: 1 MB [TRACE][14:44] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] promoting task {Molecular surface calculation} to 'Finished' [TRACE][14:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:44] releasing resource: 'Memory':0, state: 30/1536 [TRACE][14:44] Unregistering task: Molecular surface calculation [TRACE][14:44] Deleting task: Molecular surface calculation [TRACE][14:44] Estimated memory usage: 0 MB [DETAILS][14:44] Registering new task: Molecular surface calculation [TRACE][14:44] acquiring resource: 'Memory':0, state: 30/1536 [TRACE][14:44] promoting task {Molecular surface calculation} to 'Prepared' [TRACE][14:44] acquiring resource: 'Threads':1, state: 1/1000 [TRACE][14:44] promoting task {Molecular surface calculation} to 'Running' [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.188 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.14 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:44] Number of atoms: 1798, number of faces: 11242 [TRACE][14:44] Used memory: 1 MB [TRACE][14:44] BioStruct3D structure rendering time 0.156 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] promoting task {Molecular surface calculation} to 'Finished' [TRACE][14:44] releasing resource: 'Threads':1, state: 0/1000 [TRACE][14:44] releasing resource: 'Memory':0, state: 30/1536 [TRACE][14:44] Unregistering task: Molecular surface calculation [TRACE][14:44] Deleting task: Molecular surface calculation [TRACE][14:44] BioStruct3D structure rendering time 0.016 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.032 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.032 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.032 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.047 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.032 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.032 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] Window deactivation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:44] Updating active status for 1CF7.PDB [TRACE][14:44] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:44] Updating active status for [3d] 1CF7 [TRACE][14:44] Window activation, no MDI context switch, window: '1CF7.PDB' [TRACE][14:44] Updating active status for 1CF7.PDB [TRACE][14:44] Updating active status for [s] 1CF7 chain 1 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 1 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 2 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 2 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 3 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 3 annotation [TRACE][14:44] Updating active status for [s] 1CF7 chain 4 sequence [TRACE][14:44] Updating active status for [a] 1CF7 chain 4 annotation [TRACE][14:44] Updating active status for [3d] 1CF7 [TRACE][14:44] Project view now listens object events in '1CF7.PDB' view [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.031 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:44] BioStruct3D structure rendering time 0.015 s [TRACE][14:44] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] Log view update time 31 millis [TRACE][14:45] BioStruct3D structure rendering time 0.031 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.016 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] Log view update time 1062 millis [TRACE][14:45] BioStruct3D structure rendering time 0.016 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.031 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.032 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.032 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.031 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.031 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.015 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.031 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0 [TRACE][14:45] BioStruct3D structure rendering time 0.016 s [TRACE][14:45] OpenGL error: invalid operation, returned error code 1282, GL_NO_ERROR = 0