AppMemory: 15Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
UGENE initialization started
UGENE run at dir C:/Program Files/Unipro UGENE with parameters C:\Program Files\Unipro UGENE\ugeneui.exe D:\T_hg19_1000g.bam.ugenedb
Active UGENE.ini file : C:/Users/Muhammad Sohail Raza/AppData/Roaming/Unipro/UGENE.ini
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/annotator.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/ball.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/biostruct3d_view.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/browser_support.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/chroma_view.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/circular_view.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/cuda_support.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dbi_bam.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dna_export.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dna_flexibility.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dna_graphpack.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dna_stat.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/dotplot.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/enzymes.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/expert_discovery.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/external_tool_support.plugin
AppMemory: 28Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/genome_aligner.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/gor4.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/hmm2.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/hmm3.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/kalign.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/linkdata_support.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/opencl_support.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/orf_marker.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/phylip.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/primer3.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/psipred.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/ptools.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/query_designer.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/remote_blast.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/remote_service.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/repeat_finder.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/sitecon.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/smith_waterman.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/umuscle.plugin
AppMemory: 28Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/variants.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/weight_matrix.plugin
Found plugin candidate in default dir: C:/Program Files/Unipro UGENE/plugins/workflow_designer.plugin
List of the plugins to be loaded:
C:/Program Files/Unipro UGENE/plugins/cuda_support.plugin
C:/Program Files/Unipro UGENE/plugins/workflow_designer.plugin
C:/Program Files/Unipro UGENE/plugins/dotplot.plugin
C:/Program Files/Unipro UGENE/plugins/dna_flexibility.plugin
C:/Program Files/Unipro UGENE/plugins/hmm2.plugin
C:/Program Files/Unipro UGENE/plugins/orf_marker.plugin
C:/Program Files/Unipro UGENE/plugins/biostruct3d_view.plugin
C:/Program Files/Unipro UGENE/plugins/circular_view.plugin
C:/Program Files/Unipro UGENE/plugins/kalign.plugin
C:/Program Files/Unipro UGENE/plugins/ptools.plugin
C:/Program Files/Unipro UGENE/plugins/variants.plugin
C:/Program Files/Unipro UGENE/plugins/phylip.plugin
C:/Program Files/Unipro UGENE/plugins/dna_stat.plugin
C:/Program Files/Unipro UGENE/plugins/dna_graphpack.plugin
C:/Program Files/Unipro UGENE/plugins/query_designer.plugin
AppMemory: 28Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
C:/Program Files/Unipro UGENE/plugins/chroma_view.plugin
C:/Program Files/Unipro UGENE/plugins/gor4.plugin
C:/Program Files/Unipro UGENE/plugins/repeat_finder.plugin
C:/Program Files/Unipro UGENE/plugins/external_tool_support.plugin
C:/Program Files/Unipro UGENE/plugins/browser_support.plugin
C:/Program Files/Unipro UGENE/plugins/weight_matrix.plugin
C:/Program Files/Unipro UGENE/plugins/remote_blast.plugin
C:/Program Files/Unipro UGENE/plugins/dna_export.plugin
C:/Program Files/Unipro UGENE/plugins/remote_service.plugin
C:/Program Files/Unipro UGENE/plugins/ball.plugin
C:/Program Files/Unipro UGENE/plugins/primer3.plugin
C:/Program Files/Unipro UGENE/plugins/dbi_bam.plugin
C:/Program Files/Unipro UGENE/plugins/enzymes.plugin
C:/Program Files/Unipro UGENE/plugins/hmm3.plugin
C:/Program Files/Unipro UGENE/plugins/umuscle.plugin
C:/Program Files/Unipro UGENE/plugins/expert_discovery.plugin
C:/Program Files/Unipro UGENE/plugins/annotator.plugin
C:/Program Files/Unipro UGENE/plugins/smith_waterman.plugin
C:/Program Files/Unipro UGENE/plugins/genome_aligner.plugin
AppMemory: 28Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
C:/Program Files/Unipro UGENE/plugins/psipred.plugin
C:/Program Files/Unipro UGENE/plugins/linkdata_support.plugin
C:/Program Files/Unipro UGENE/plugins/opencl_support.plugin
C:/Program Files/Unipro UGENE/plugins/sitecon.plugin
End of the list
Registering new task: Loading start up plugins
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum100.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum30.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum35.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum40.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum45.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum50.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum55.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum60.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum62.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum65.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum70.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum75.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum80.txt
AppMemory: 29Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum85.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosum90.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/blosumn.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/dayhoff.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/dna.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/gonnet.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/identity.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/match.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/md_10.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/md_20.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/md_40.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/nuc.4.4.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam10.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam100.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam110.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam120.cdi.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam120.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam130.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam140.txt
AppMemory: 29Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam150.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam160.cdi.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam160.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam170.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam180.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam190.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam20.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam200.cdi.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam200.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam210.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam220.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam230.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam240.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam250.cdi.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam250.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam260.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam270.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam280.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam290.txt
AppMemory: 30Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam30.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam300.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam310.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam320.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam330.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam340.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam350.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam360.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam370.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam380.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam390.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam40.cdi.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam40.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam400.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam410.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam420.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam430.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam440.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam450.txt
AppMemory: 30Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam460.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam470.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam480.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam490.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam50.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam500.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam60.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam70.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam80.cdi.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam80.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/pam90.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/rna.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/vtml160.txt
Reading substitution matrix from C:/Program Files/Unipro UGENE/data/weight_matrix/vtml200.txt
Loading OPENCL driver library
Cannot load OpenCL library. Error while loading OpenCL
SQLite: initialized: C:/Users/Muhammad Sohail Raza/.UGENE_files/fileinfo.ugenedb

Registering new task: Register 'PluginViewer' service
Registering new task: Register 'ProjectView' service
AppMemory: 31Mb; Locked memory AppResource: 0/6006; SQLite memory 0Mb, max 0Mb
64-bit version of UGENE started
Registering new task: Startup checks
AppResource Memory ::tryAcquire 160, available 6006
Promoting task {Loading start up plugins} to 'Prepared'
Promoting task {Add plugin task: sitecon} to 'Prepared'
Promoting task {Register 'PluginViewer' service} to 'Prepared'
Promoting task {Enable 'PluginViewer' service} to 'Prepared'
Promoting task {Enable PluginViewer} to 'Prepared'
Promoting task {Register 'ProjectView' service} to 'Prepared'
Promoting task {Enable 'ProjectView' service} to 'Prepared', error 'Required service is not enabled: ProjectView'
Promoting task {Startup checks} to 'Prepared'
Promoting task {Checking access rights to the temporary folder} to 'Prepared'
Promoting task {Loading start up plugins} to 'Running'
Promoting task {Add plugin task: sitecon} to 'Running'
Promoting task {Register 'PluginViewer' service} to 'Running'
Promoting task {Enable 'PluginViewer' service} to 'Running'
Promoting task {Enable PluginViewer} to 'Running'
Promoting task {Register 'ProjectView' service} to 'Running'
Promoting task {Enable 'ProjectView' service} to 'Running', error 'Required service is not enabled: ProjectView'
AppMemory: 32Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Startup checks} to 'Running'
AppResource Threads ::tryAcquire 1, available 1000
Promoting task {Checking access rights to the temporary folder} to 'Running'
Promoting task {Enable 'ProjectView' service} to 'Finished', error 'Required service is not enabled: ProjectView'
Promoting task {Register 'ProjectView' service} to 'Finished'
Promoting task {Enable PluginViewer} to 'Finished'
Promoting task {Enable 'PluginViewer' service} to 'Finished'
Promoting task {Register 'PluginViewer' service} to 'Finished'
Promoting task {Add plugin task: sitecon} to 'Finished'
Unregistering task: Register 'PluginViewer' service
Deleting task: Enable PluginViewer
Deleting task: Enable 'PluginViewer' service
Deleting task: Register 'PluginViewer' service
Unregistering task: Register 'ProjectView' service
Deleting task: Enable 'ProjectView' service
Deleting task: Register 'ProjectView' service
Promoting task {Add plugin task: opencl_support} to 'Prepared'
Promoting task {Add plugin task: opencl_support} to 'Running'
Cannot load library: OpenCL
AppMemory: 34Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Add plugin task: opencl_support} to 'Finished'
AppResource Threads ::release 1, available 999
Promoting task {Checking access rights to the temporary folder} to 'Finished'
Promoting task {Startup checks} to 'Finished'
Unregistering task: Startup checks
Deleting task: Checking access rights to the temporary folder
Deleting task: Startup checks
Promoting task {Add plugin task: linkdata_support} to 'Prepared'
Promoting task {Add plugin task: linkdata_support} to 'Running'
Promoting task {Add plugin task: linkdata_support} to 'Finished'
Promoting task {Add plugin task: psipred} to 'Prepared'
Promoting task {Add plugin task: psipred} to 'Running'
Promoting task {Add plugin task: psipred} to 'Finished'
Promoting task {Add plugin task: genome_aligner} to 'Prepared'
Promoting task {Add plugin task: genome_aligner} to 'Running'
Promoting task {Add plugin task: genome_aligner} to 'Finished'
Promoting task {Add plugin task: smith_waterman} to 'Prepared'
Promoting task {Add plugin task: smith_waterman} to 'Running'
Registering classic SW implementation
AppMemory: 36Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Registering SSE2 SW implementation
Promoting task {Add plugin task: smith_waterman} to 'Finished'
Promoting task {Add plugin task: annotator} to 'Prepared'
Promoting task {Add plugin task: annotator} to 'Running'
Promoting task {Add plugin task: annotator} to 'Finished'
Promoting task {Add plugin task: expert_discovery} to 'Prepared'
Promoting task {Add plugin task: expert_discovery} to 'Running'
Promoting task {Add plugin task: expert_discovery} to 'Finished'
Promoting task {Add plugin task: umuscle} to 'Prepared'
Promoting task {Add plugin task: umuscle} to 'Running'
Promoting task {Add plugin task: umuscle} to 'Finished'
Promoting task {Add plugin task: hmm3} to 'Prepared'
Promoting task {Add plugin task: hmm3} to 'Running'
Promoting task {Add plugin task: hmm3} to 'Finished'
Promoting task {Add plugin task: enzymes} to 'Prepared'
Promoting task {Add plugin task: enzymes} to 'Running'
Promoting task {Add plugin task: enzymes} to 'Finished'
Promoting task {Add plugin task: dbi_bam} to 'Prepared'
Promoting task {Add plugin task: dbi_bam} to 'Running'
AppMemory: 38Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Add plugin task: dbi_bam} to 'Finished'
Promoting task {Add plugin task: primer3} to 'Prepared'
Promoting task {Add plugin task: primer3} to 'Running'
Promoting task {Add plugin task: primer3} to 'Finished'
Promoting task {Add plugin task: ball} to 'Prepared'
Promoting task {Add plugin task: ball} to 'Running'
Promoting task {Add plugin task: ball} to 'Finished'
Promoting task {Add plugin task: remote_service} to 'Prepared'
Promoting task {Add plugin task: remote_service} to 'Running'
Promoting task {Add plugin task: remote_service} to 'Finished'
Promoting task {Add plugin task: dna_export} to 'Prepared'
Promoting task {Add plugin task: dna_export} to 'Running'
Registering new task: Register 'DNA export service' service
Promoting task {Add plugin task: dna_export} to 'Finished'
Promoting task {Add plugin task: remote_blast} to 'Prepared'
Promoting task {Register 'DNA export service' service} to 'Prepared'
Promoting task {Enable 'DNA export service' service} to 'Prepared', error 'Required service is not enabled: DNA export service'
Promoting task {Add plugin task: remote_blast} to 'Running'
Promoting task {Register 'DNA export service' service} to 'Running'
AppMemory: 39Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Enable 'DNA export service' service} to 'Running', error 'Required service is not enabled: DNA export service'
Promoting task {Enable 'DNA export service' service} to 'Finished', error 'Required service is not enabled: DNA export service'
Promoting task {Register 'DNA export service' service} to 'Finished'
Promoting task {Add plugin task: remote_blast} to 'Finished'
Unregistering task: Register 'DNA export service' service
Deleting task: Enable 'DNA export service' service
Deleting task: Register 'DNA export service' service
Promoting task {Add plugin task: weight_matrix} to 'Prepared'
Promoting task {Add plugin task: weight_matrix} to 'Running'
Promoting task {Add plugin task: weight_matrix} to 'Finished'
Promoting task {Add plugin task: browser_support} to 'Prepared'
Promoting task {Add plugin task: browser_support} to 'Running'
Promoting task {Add plugin task: browser_support} to 'Finished'
Promoting task {Add plugin task: external_tool_support} to 'Prepared'
Promoting task {Add plugin task: external_tool_support} to 'Running'
Registering new task: Checking external tools for first time
Registering new task: Register 'External tools support' service
Promoting task {Add plugin task: external_tool_support} to 'Finished'
Promoting task {Add plugin task: repeat_finder} to 'Prepared'
AppMemory: 42Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Checking external tools for first time} to 'Prepared'
Promoting task {CEAS Tools validate task} to 'Prepared'
Promoting task {Register 'External tools support' service} to 'Prepared'
Promoting task {Enable 'External tools support' service} to 'Prepared', error 'Required service is not enabled: External tools support'
Promoting task {Add plugin task: repeat_finder} to 'Running'
Promoting task {Checking external tools for first time} to 'Running'
AppResource Threads ::tryAcquire 1, available 1000
Promoting task {CEAS Tools validate task} to 'Running'
Promoting task {Register 'External tools support' service} to 'Running'
Promoting task {Enable 'External tools support' service} to 'Running', error 'Required service is not enabled: External tools support'
Creating validation task for: CEAS Tools
Program executable: C:\Program Files\Unipro UGENE\tools\ext_tools_win_64-bit\cistrome\CEAS\ceas.py
Program arguments: C:\Program Files\Unipro UGENE\tools\ext_tools_win_64-bit\cistrome\CEAS\ceas.py --version
Promoting task {Enable 'External tools support' service} to 'Finished', error 'Required service is not enabled: External tools support'
Promoting task {Register 'External tools support' service} to 'Finished'
AppResource Threads ::release 1, available 999
Promoting task {CEAS Tools validate task} to 'Finished', error 'R Script required for this tool. Please install R Script or set your PATH variable if you have it installed.'
Promoting task {Add plugin task: repeat_finder} to 'Finished'
Unregistering task: Register 'External tools support' service
AppMemory: 43Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Deleting task: Enable 'External tools support' service
Deleting task: Register 'External tools support' service
Promoting task {Add plugin task: gor4} to 'Prepared'
Promoting task {MACS validate task} to 'Prepared'
Promoting task {Add plugin task: gor4} to 'Running'
Promoting task {MACS validate task} to 'Running'
Promoting task {MACS validate task} to 'Finished'
Promoting task {Add plugin task: gor4} to 'Finished'
Promoting task {Add plugin task: chroma_view} to 'Prepared'
Promoting task {peak2gene validate task} to 'Prepared'
Promoting task {Add plugin task: chroma_view} to 'Running'
Promoting task {peak2gene validate task} to 'Running'
Promoting task {peak2gene validate task} to 'Finished'
Promoting task {Add plugin task: chroma_view} to 'Finished'
Promoting task {Add plugin task: query_designer} to 'Prepared'
Promoting task {conservation_plot validate task} to 'Prepared'
Promoting task {Add plugin task: query_designer} to 'Running'
Promoting task {conservation_plot validate task} to 'Running'
Promoting task {conservation_plot validate task} to 'Finished'
AppMemory: 43Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Registering new task: Register 'Query Designer' service
Promoting task {Add plugin task: query_designer} to 'Finished'
Promoting task {Add plugin task: dna_graphpack} to 'Prepared'
Promoting task {seqpos validate task} to 'Prepared'
Promoting task {Register 'Query Designer' service} to 'Prepared'
Promoting task {Enable 'Query Designer' service} to 'Prepared'
Promoting task {Load query samples} to 'Prepared'
Promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Prepared'
Promoting task {Add plugin task: dna_graphpack} to 'Running'
Promoting task {seqpos validate task} to 'Running'
Promoting task {Register 'Query Designer' service} to 'Running'
Promoting task {Enable 'Query Designer' service} to 'Running'
Promoting task {Load query samples} to 'Running'
AppResource Threads ::tryAcquire 1, available 1000
Promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Running'
Loading scheme from file: C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql
Promoting task {seqpos validate task} to 'Finished'
Promoting task {Add plugin task: dna_graphpack} to 'Finished'
Promoting task {Add plugin task: dna_stat} to 'Prepared'
AppMemory: 43Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {go_analysis validate task} to 'Prepared'
Promoting task {Add plugin task: dna_stat} to 'Running'
Promoting task {go_analysis validate task} to 'Running'
Promoting task {go_analysis validate task} to 'Finished'
Promoting task {Add plugin task: dna_stat} to 'Finished'
AppResource Threads ::release 1, available 999
Promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql} to 'Finished'
Promoting task {Checking external tools for first time} to 'Finished', error 'Subtask {CEAS Tools validate task} is failed: R Script required for this tool. Please install R Script or set your PATH variable if you have it installed.'
Task {Checking external tools for first time} finished with error: Subtask {CEAS Tools validate task} is failed: R Script required for this tool. Please install R Script or set your PATH variable if you have it installed.
Unregistering task: Checking external tools for first time
Deleting task: CEAS Tools validate task
Deleting task: MACS validate task
Deleting task: peak2gene validate task
Deleting task: conservation_plot validate task
Deleting task: seqpos validate task
Deleting task: go_analysis validate task
Deleting task: Checking external tools for first time
Promoting task {Add plugin task: phylip} to 'Prepared'
Promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Prepared'
AppMemory: 44Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Add plugin task: phylip} to 'Running'
AppResource Threads ::tryAcquire 1, available 1000
Promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Running'
Loading scheme from file: C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql
AppResource Threads ::release 1, available 999
Promoting task {Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql} to 'Finished'
Promoting task {Add plugin task: phylip} to 'Finished'
Promoting task {Load query samples} to 'Finished'
Promoting task {Enable 'Query Designer' service} to 'Finished'
Promoting task {Register 'Query Designer' service} to 'Finished'
Unregistering task: Register 'Query Designer' service
Deleting task: Loading document from C:/Program Files/Unipro UGENE/data/query_samples/RepeatsWithORF.uql
Deleting task: Loading document from C:/Program Files/Unipro UGENE/data/query_samples/SimpleGene.uql
Deleting task: Load query samples
Deleting task: Enable 'Query Designer' service
Deleting task: Register 'Query Designer' service
Promoting task {Add plugin task: variants} to 'Prepared'
Promoting task {Add plugin task: variants} to 'Running'
Promoting task {Add plugin task: variants} to 'Finished'
AppMemory: 45Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Add plugin task: ptools} to 'Prepared'
Promoting task {Add plugin task: ptools} to 'Running'
Promoting task {Add plugin task: ptools} to 'Finished'
Promoting task {Add plugin task: kalign} to 'Prepared'
Promoting task {Add plugin task: kalign} to 'Running'
Promoting task {Add plugin task: kalign} to 'Finished'
Promoting task {Add plugin task: circular_view} to 'Prepared'
Promoting task {Add plugin task: circular_view} to 'Running'
Promoting task {Add plugin task: circular_view} to 'Finished'
Promoting task {Add plugin task: biostruct3d_view} to 'Prepared'
Promoting task {Add plugin task: biostruct3d_view} to 'Running'
Promoting task {Add plugin task: biostruct3d_view} to 'Finished'
Promoting task {Add plugin task: orf_marker} to 'Prepared'
Promoting task {Add plugin task: orf_marker} to 'Running'
Promoting task {Add plugin task: orf_marker} to 'Finished'
Promoting task {Add plugin task: hmm2} to 'Prepared'
Promoting task {Add plugin task: hmm2} to 'Running'
Promoting task {Add plugin task: hmm2} to 'Finished'
Promoting task {Add plugin task: dna_flexibility} to 'Prepared'
AppMemory: 47Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Add plugin task: dna_flexibility} to 'Running'
Promoting task {Add plugin task: dna_flexibility} to 'Finished'
Promoting task {Add plugin task: dotplot} to 'Prepared'
Promoting task {Add plugin task: dotplot} to 'Running'
Promoting task {Add plugin task: dotplot} to 'Finished'
Promoting task {Add plugin task: workflow_designer} to 'Prepared'
Promoting task {Add plugin task: workflow_designer} to 'Running'
Registering new task: Register 'Workflow Designer' service
Promoting task {Add plugin task: workflow_designer} to 'Finished'
Promoting task {Add plugin task: cuda_support} to 'Prepared'
Promoting task {Register 'Workflow Designer' service} to 'Prepared'
Promoting task {Enable 'Workflow Designer' service} to 'Prepared'
Promoting task {Load workflow samples} to 'Prepared'
Promoting task {Add plugin task: cuda_support} to 'Running'
Promoting task {Register 'Workflow Designer' service} to 'Running'
Promoting task {Enable 'Workflow Designer' service} to 'Running'
AppResource Threads ::tryAcquire 1, available 1000
Promoting task {Load workflow samples} to 'Running'
Loading CUDA driver library
AppMemory: 49Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Cannot load driver library. Error while loading nvcuda:Cannot load library nvcuda: The specified module could not be found.
No CUDA-enabled GPUs found.
Promoting task {Add plugin task: cuda_support} to 'Finished'
Registering new task: Opening document: D:/T_hg19_1000g.bam.ugenedb
Promoting task {Loading start up plugins} to 'Finished'
Unregistering task: Loading start up plugins
Deleting task: Add plugin task: sitecon
Deleting task: Add plugin task: opencl_support
Deleting task: Add plugin task: linkdata_support
Deleting task: Add plugin task: psipred
Deleting task: Add plugin task: genome_aligner
Deleting task: Add plugin task: smith_waterman
Deleting task: Add plugin task: annotator
Deleting task: Add plugin task: expert_discovery
Deleting task: Add plugin task: umuscle
Deleting task: Add plugin task: hmm3
Deleting task: Add plugin task: enzymes
Deleting task: Add plugin task: dbi_bam
Deleting task: Add plugin task: primer3
AppMemory: 49Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Deleting task: Add plugin task: ball
Deleting task: Add plugin task: remote_service
Deleting task: Add plugin task: dna_export
Deleting task: Add plugin task: remote_blast
Deleting task: Add plugin task: weight_matrix
Deleting task: Add plugin task: browser_support
Deleting task: Add plugin task: external_tool_support
Deleting task: Add plugin task: repeat_finder
Deleting task: Add plugin task: gor4
Deleting task: Add plugin task: chroma_view
Deleting task: Add plugin task: query_designer
Deleting task: Add plugin task: dna_graphpack
Deleting task: Add plugin task: dna_stat
Deleting task: Add plugin task: phylip
Deleting task: Add plugin task: variants
Deleting task: Add plugin task: ptools
Deleting task: Add plugin task: kalign
Deleting task: Add plugin task: circular_view
Deleting task: Add plugin task: biostruct3d_view
AppMemory: 49Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Deleting task: Add plugin task: orf_marker
Deleting task: Add plugin task: hmm2
Deleting task: Add plugin task: dna_flexibility
Deleting task: Add plugin task: dotplot
Deleting task: Add plugin task: workflow_designer
Deleting task: Add plugin task: cuda_support
Deleting task: Loading start up plugins
Promoting task {Opening document: D:/T_hg19_1000g.bam.ugenedb} to 'Prepared'
Promoting task {Loading documents} to 'Prepared'
Promoting task {Open project/document} to 'Prepared'
Promoting task {Register project} to 'Prepared'
Promoting task {Register 'Project' service} to 'Prepared'
Promoting task {Enable 'Project' service} to 'Prepared'
Promoting task {Enable Project} to 'Prepared'
Promoting task {Opening document: D:/T_hg19_1000g.bam.ugenedb} to 'Running'
Promoting task {Loading documents} to 'Running'
Promoting task {Open project/document} to 'Running'
Promoting task {Register project} to 'Running'
Promoting task {Register 'Project' service} to 'Running'
AppMemory: 50Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Enable 'Project' service} to 'Running'
Promoting task {Enable Project} to 'Running'
Promoting task {Enable Project} to 'Finished'
Promoting task {Enable 'Project' service} to 'Finished'
Promoting task {Register 'Project' service} to 'Finished'
Promoting task {Register project} to 'Finished'
Promoting task {Open project/document} to 'Finished'
Promoting task {Opening view for document: T_hg19_1000g.bam.ugenedb} to 'Prepared'
Promoting task {Adding document to project: D:/T_hg19_1000g.bam.ugenedb} to 'Prepared'
Promoting task {Opening view for document: T_hg19_1000g.bam.ugenedb} to 'Running'
Promoting task {Adding document to project: D:/T_hg19_1000g.bam.ugenedb} to 'Running'
Adding document to the project: D:/T_hg19_1000g.bam.ugenedb
Promoting task {Adding document to project: D:/T_hg19_1000g.bam.ugenedb} to 'Finished'
Promoting task {Load document: 'T_hg19_1000g.bam.ugenedb'} to 'Prepared'
Starting load document from D:/T_hg19_1000g.bam.ugenedb, document format UGENE Database
resource 'Project Document::D:/T_hg19_1000g.bam.ugenedb' is used by 'Load 'T_hg19_1000g.bam.ugenedb''
Promoting task {Load 'T_hg19_1000g.bam.ugenedb'} to 'Prepared'
Promoting task {Read document: 'T_hg19_1000g.bam.ugenedb'} to 'Prepared'
Promoting task {Load document: 'T_hg19_1000g.bam.ugenedb'} to 'Running'
AppMemory: 50Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Promoting task {Load 'T_hg19_1000g.bam.ugenedb'} to 'Running'
AppResource Threads ::tryAcquire 1, available 999
Promoting task {Read document: 'T_hg19_1000g.bam.ugenedb'} to 'Running'
DbiPool: Opening DBI. Url: D:/T_hg19_1000g.bam.ugenedb, factory: SQLiteDbi
SQLite: initialized: D:/T_hg19_1000g.bam.ugenedb

DbiPool: decreasing reference count. Url: D:/T_hg19_1000g.bam.ugenedb, ref-count: 0
SQLite: shutting down: D:/T_hg19_1000g.bam.ugenedb

DBIPool: resource is released. Url: D:/T_hg19_1000g.bam.ugenedb
AppResource Threads ::release 1, available 998
Promoting task {Read document: 'T_hg19_1000g.bam.ugenedb'} to 'Finished'
resource 'Project Document::D:/T_hg19_1000g.bam.ugenedb' is released by 'Load 'T_hg19_1000g.bam.ugenedb''
Promoting task {Load 'T_hg19_1000g.bam.ugenedb'} to 'Finished'
Promoting task {Open view} to 'Prepared'
Promoting task {Open new 'Assembly Browser'} to 'Prepared'
Promoting task {Open view} to 'Running'
Promoting task {Open new 'Assembly Browser'} to 'Running'
DbiPool: Opening DBI. Url: D:/T_hg19_1000g.bam.ugenedb, factory: SQLiteDbi
SQLite: initialized: D:/T_hg19_1000g.bam.ugenedb

DbiPool: Increasing reference count. Url: D:/T_hg19_1000g.bam.ugenedb, ref-count: 2
AppMemory: 50Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
DbiPool: decreasing reference count. Url: D:/T_hg19_1000g.bam.ugenedb, ref-count: 1
Adding window: 'T_hg19_1000g.bam [as] 8'
Registering new task: Calculate assembly coverage
Switching active MDI window from '<no window>' to 'T_hg19_1000g.bam [as] 8'
Registering new task: Calculate assembly coverage
Promoting task {Open new 'Assembly Browser'} to 'Finished'
Promoting task {Open view} to 'Finished'
Promoting task {Load document: 'T_hg19_1000g.bam.ugenedb'} to 'Finished'
Promoting task {Opening view for document: T_hg19_1000g.bam.ugenedb} to 'Finished'
Promoting task {Loading documents} to 'Finished'
Promoting task {Opening document: D:/T_hg19_1000g.bam.ugenedb} to 'Finished'
Unregistering task: Opening document: D:/T_hg19_1000g.bam.ugenedb
Deleting task: Enable Project
Deleting task: Enable 'Project' service
Deleting task: Register 'Project' service
Deleting task: Register project
Deleting task: Open project/document
Deleting task: Adding document to project: D:/T_hg19_1000g.bam.ugenedb
Deleting task: Read document: 'T_hg19_1000g.bam.ugenedb'
AppMemory: 51Mb; Locked memory AppResource: 160/6006; SQLite memory 0Mb, max 0Mb
Deleting task: Load 'T_hg19_1000g.bam.ugenedb'
Deleting task: Open new 'Assembly Browser'
Deleting task: Open view
Deleting task: Load document: 'T_hg19_1000g.bam.ugenedb'
Deleting task: Opening view for document: T_hg19_1000g.bam.ugenedb
Deleting task: Loading documents
Deleting task: Opening document: D:/T_hg19_1000g.bam.ugenedb
Promoting task {Calculate assembly coverage} to 'Finished'
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Promoting task {Calculate assembly coverage} to 'Prepared'
AppResource Threads ::tryAcquire 1, available 999
Promoting task {Calculate assembly coverage} to 'Running'
Assembly: full coverage calculation time for 0..1: 0.472027 seconds
AppResource Threads ::release 1, available 998
Promoting task {Calculate assembly coverage} to 'Finished'
AppResource Threads ::release 1, available 999
Promoting task {Load workflow samples} to 'Finished'
Promoting task {Enable 'Workflow Designer' service} to 'Finished'
AppMemory: 107Mb; Locked memory AppResource: 160/6006; SQLite memory 5Mb, max 9Mb
Promoting task {Register 'Workflow Designer' service} to 'Finished'
Unregistering task: Register 'Workflow Designer' service
Deleting task: Load workflow samples
Deleting task: Enable 'Workflow Designer' service
Deleting task: Register 'Workflow Designer' service
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Registering new task: Enable 'ProjectView' service
Promoting task {Enable 'ProjectView' service} to 'Prepared'
Promoting task {Enable ProjectView} to 'Prepared'
Promoting task {Enable 'ProjectView' service} to 'Running'
Promoting task {Enable ProjectView} to 'Running'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Registering new task: Calculate assembly coverage
Promoting task {Enable ProjectView} to 'Finished'
Assembly: full coverage calculation time for 0..1: 0 seconds
Promoting task {Enable 'ProjectView' service} to 'Finished'
AppMemory: 108Mb; Locked memory AppResource: 160/6006; SQLite memory 5Mb, max 9Mb
Unregistering task: Enable 'ProjectView' service
Deleting task: Enable ProjectView
Deleting task: Enable 'ProjectView' service
Promoting task {Calculate assembly coverage} to 'Prepared'
AppResource Threads ::tryAcquire 1, available 1000
Promoting task {Calculate assembly coverage} to 'Running'
Registering new task: Enable 'DNA export service' service
Registering new task: Calculate assembly coverage
Promoting task {Enable 'DNA export service' service} to 'Prepared'
Promoting task {Calculate assembly coverage} to 'Prepared'
Promoting task {Enable 'DNA export service' service} to 'Running'
AppResource Threads ::tryAcquire 1, available 999
Promoting task {Calculate assembly coverage} to 'Running'
Assembly: full coverage calculation time for 0..1: 0 seconds
AppResource Threads ::release 1, available 998
Promoting task {Calculate assembly coverage} to 'Finished'
Promoting task {Enable 'DNA export service' service} to 'Finished'
AppResource Threads ::release 1, available 999
Promoting task {Calculate assembly coverage} to 'Finished'
AppMemory: 109Mb; Locked memory AppResource: 160/6006; SQLite memory 5Mb, max 9Mb
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Unregistering task: Enable 'DNA export service' service
Deleting task: Enable 'DNA export service' service
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Registering new task: Enable 'External tools support' service
Promoting task {Enable 'External tools support' service} to 'Prepared'
Promoting task {Enable 'External tools support' service} to 'Running'
Promoting task {Enable 'External tools support' service} to 'Finished'
Unregistering task: Enable 'External tools support' service
Deleting task: Enable 'External tools support' service
Assembly: full coverage calculation time for 36367435..36367436: 0.204012 seconds
Assembly: full coverage calculation time for 68412511..68412512: 0.164009 seconds
Assembly: full coverage calculation time for 38603138..38603139: 0.131008 seconds
Assembly: full coverage calculation time for 38901232..38901233: 0.156009 seconds
Assembly: full coverage calculation time for 44266919..44266920: 0.014001 seconds
Assembly: full coverage calculation time for 45310247..45310248: 0.001 seconds
Assembly: full coverage calculation time for 45757388..45757389: 0 seconds
AppMemory: 109Mb; Locked memory AppResource: 160/6006; SQLite memory 5Mb, max 9Mb
Assembly: full coverage calculation time for 46204528..46204529: 0 seconds
Assembly: full coverage calculation time for 46353575..46353576: 0 seconds
Assembly: full coverage calculation time for 47098810..47098811: 0.047003 seconds
Assembly: full coverage calculation time for 47694997..47694998: 0.001 seconds
Assembly: full coverage calculation time for 47993091..47993092: 0.002 seconds
Assembly: full coverage calculation time for 48142138..48142139: 0.012001 seconds
Assembly: full coverage calculation time for 48291184..48291185: 0.058003 seconds
Assembly: full coverage calculation time for 49036419..49036420: 0.016001 seconds
Assembly: full coverage calculation time for 49185466..49185467: 0.001 seconds
Assembly: full coverage calculation time for 49185466..49185467: 0.001 seconds
Assembly: full coverage calculation time for 49334513..49334514: 0.001 seconds
Assembly: full coverage calculation time for 49334513..49334514: 0 seconds
Assembly: full coverage calculation time for 49483559..49483560: 0.014 seconds
Assembly: full coverage calculation time for 49632606..49632607: 0.005 seconds
Assembly: full coverage calculation time for 50079747..50079748: 0.054003 seconds
Assembly: full coverage calculation time for 50675934..50675935: 0.098005 seconds
Assembly: full coverage calculation time for 52017356..52017357: 0.124007 seconds
Assembly: full coverage calculation time for 52762590..52762591: 0.141008 seconds
Registering new task: Calculate assembly consensus
AppMemory: 109Mb; Locked memory AppResource: 160/6006; SQLite memory 6Mb, max 9Mb
Registering new task: Calculate assembly coverage
Assembly: full coverage calculation time for 354..355: 0.001 seconds
Assembly: reads 2D select time: 0 seconds
Assembly: reads 2D load time: 0
Assembly: drawing reads (0 bases)   : 0.002 seconds
Promoting task {Calculate assembly consensus} to 'Prepared'
Promoting task {Calculate assembly coverage} to 'Prepared'
AppResource Threads ::tryAcquire 1, available 1000
Promoting task {Calculate assembly consensus} to 'Running'
AppResource Threads ::tryAcquire 1, available 999
Promoting task {Calculate assembly coverage} to 'Running'
Assembly: 'Default' consensus calculation time: 0.001 seconds
Assembly: full coverage calculation time for 0..982: 0 seconds
Promoting task {Calculate assembly consensus} to 'Finished'
Unregistering task: Calculate assembly consensus
Deleting task: Calculate assembly consensus
AppResource Threads ::release 1, available 998
Promoting task {Calculate assembly coverage} to 'Finished'
Unregistering task: Calculate assembly coverage
AppMemory: 110Mb; Locked memory AppResource: 160/6006; SQLite memory 6Mb, max 9Mb
Deleting task: Calculate assembly coverage
Registering new task: Calculate assembly consensus
Registering new task: Calculate assembly coverage
Assembly: full coverage calculation time for 154586..154587: 0.18101 seconds
Assembly: reads 2D select time: 0.002 seconds
Assembly: reads 2D load time: 0.025001
Assembly: drawing reads (0 bases)   : 0.026001 seconds
Registering new task: Calculate assembly consensus
Registering new task: Calculate assembly coverage
Promoting task {Calculate assembly consensus} to 'Finished'
Unregistering task: Calculate assembly consensus
Deleting task: Calculate assembly consensus
Promoting task {Calculate assembly coverage} to 'Finished'
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Promoting task {Calculate assembly consensus} to 'Prepared'
Promoting task {Calculate assembly coverage} to 'Prepared'
AppResource Threads ::tryAcquire 1, available 999
Promoting task {Calculate assembly consensus} to 'Running'
AppMemory: 111Mb; Locked memory AppResource: 160/6006; SQLite memory 6Mb, max 9Mb
AppResource Threads ::tryAcquire 1, available 998
Promoting task {Calculate assembly coverage} to 'Running'
Registering new task: Calculate assembly consensus
Registering new task: Calculate assembly coverage
Promoting task {Calculate assembly consensus} to 'Prepared'
Promoting task {Calculate assembly coverage} to 'Prepared'
AppResource Threads ::tryAcquire 1, available 997
Promoting task {Calculate assembly consensus} to 'Running'
AppResource Threads ::tryAcquire 1, available 996
Promoting task {Calculate assembly coverage} to 'Running'
Assembly: full coverage calculation time for 5409405..5410387: 0.222013 seconds
Assembly: full coverage calculation time for 5873100..5873101: 0.302018 seconds
Assembly: reads 2D select time: 0.003 seconds
Assembly: full coverage calculation time for 5873068..5874050: 0.314018 seconds
Assembly: reads 2D load time: 0.017001
Assembly: drawing reads (0 bases)   : 0.018001 seconds
Assembly: 'Default' consensus calculation time: 0.326019 seconds
Registering new task: Calculate assembly consensus
Registering new task: Calculate assembly coverage
AppMemory: 111Mb; Locked memory AppResource: 160/6006; SQLite memory 6Mb, max 9Mb
AppResource Threads ::release 1, available 995
Promoting task {Calculate assembly coverage} to 'Finished'
AppResource Threads ::release 1, available 996
Promoting task {Calculate assembly consensus} to 'Finished'
AppResource Threads ::release 1, available 997
Promoting task {Calculate assembly coverage} to 'Finished'
AppResource Threads ::release 1, available 998
Promoting task {Calculate assembly consensus} to 'Finished'
Unregistering task: Calculate assembly consensus
Deleting task: Calculate assembly consensus
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Unregistering task: Calculate assembly consensus
Deleting task: Calculate assembly consensus
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Promoting task {Calculate assembly consensus} to 'Prepared'
Promoting task {Calculate assembly coverage} to 'Prepared'
AppResource Threads ::tryAcquire 1, available 999
AppMemory: 111Mb; Locked memory AppResource: 160/6006; SQLite memory 6Mb, max 9Mb
Promoting task {Calculate assembly consensus} to 'Running'
AppResource Threads ::tryAcquire 1, available 998
Promoting task {Calculate assembly coverage} to 'Running'
Assembly: full coverage calculation time for 9427852..9427853: 0.189011 seconds
Assembly: reads 2D select time: 0.002 seconds
Assembly: full coverage calculation time for 9427820..9428802: 0.202011 seconds
Assembly: reads 2D load time: 0.021001
Assembly: drawing reads (0 bases)   : 0.022001 seconds
Assembly: 'Default' consensus calculation time: 0.214012 seconds
AppResource Threads ::release 1, available 997
Promoting task {Calculate assembly coverage} to 'Finished'
AppResource Threads ::release 1, available 998
Promoting task {Calculate assembly consensus} to 'Finished'
Unregistering task: Calculate assembly consensus
Deleting task: Calculate assembly consensus
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Assembly: reads 2D select time: 0 seconds
Assembly: reads 2D load time: 0.006001
AppMemory: 112Mb; Locked memory AppResource: 160/6006; SQLite memory 6Mb, max 9Mb
Assembly: drawing reads (28801 bases)   : 0.026002 seconds
Registering new task: Export consensus of assembly '8' to 'T_hg19_1000g_consensus.fa'
Allocating a tmp dbi with alias: session
DbiPool: Opening DBI. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, factory: SQLiteDbi
SQLite: initialized: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb

DbiPool: decreasing reference count. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, ref-count: 0
SQLite: shutting down: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb

DBIPool: resource is released. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb
Allocated tmp dbi: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb
DbiPool: Opening DBI. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, factory: SQLiteDbi
SQLite: initialized: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb

DbiPool: Opening DBI. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, factory: SQLiteDbi
Promoting task {Export consensus of assembly '8' to 'T_hg19_1000g_consensus.fa'} to 'Prepared'
Promoting task {Assembly consensus worker} to 'Prepared'
Promoting task {Export consensus of assembly '8' to 'T_hg19_1000g_consensus.fa'} to 'Running'
AppResource Threads ::tryAcquire 1, available 999
Promoting task {Assembly consensus worker} to 'Running'
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
AppMemory: 204Mb; Locked memory AppResource: 160/6006; SQLite memory 64Mb, max 64Mb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
AppMemory: 246Mb; Locked memory AppResource: 160/6006; SQLite memory 95Mb, max 101Mb
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
AppMemory: 283Mb; Locked memory AppResource: 160/6006; SQLite memory 127Mb, max 132Mb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
AppMemory: 282Mb; Locked memory AppResource: 160/6006; SQLite memory 128Mb, max 134Mb
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
AppMemory: 284Mb; Locked memory AppResource: 160/6006; SQLite memory 128Mb, max 134Mb
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
SQL: error: Unexpected query result code: 11 (database disk image is malformed) in query: SELECT  id, prow, gstart, elen, flags, mq, data FROM AssemblyRead_M1_50_100_0 WHERE  ((gstart < ?1 AND gstart > ?2) AND gstart + elen > ?3) 
SQL: error: SQLite: Error finalizing statement: Error querying database: database disk image is malformed in query: SELECT  id, prow, gstart, elen, flags, mq, data FROM AssemblyRead_M1_50_100_0 WHERE  ((gstart < ?1 AND gstart > ?2) AND gstart + elen > ?3) 
AppResource Threads ::release 1, available 998
Promoting task {Assembly consensus worker} to 'Finished', error 'Unexpected query result code: 11 (database disk image is malformed)'
Trying to recover from error: Failed to get trackMod! at D:\teamcity\work\ugene-snapshot-branch\src\corelibs\U2Formats\src\sqlite_dbi\SQLiteObjectDbi.cpp:895
Trying to recover from error: Subtask {Assembly consensus worker} is failed: Unexpected query result code: 11 (database disk image is malformed) at D:\teamcity\work\ugene-snapshot-branch\src\corelibs\U2Formats\src\sqlite_dbi\SQLiteSequenceDbi.cpp:191
Operation failed: Subtask {Assembly consensus worker} is failed: Unexpected query result code: 11 (database disk image is malformed) at D:\teamcity\work\ugene-snapshot-branch\src\corelibs\U2Core\src\util\U2SequenceUtils.cpp:431
DbiPool: decreasing reference count. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, ref-count: 1
Promoting task {Save document} to 'Prepared'
Promoting task {Save document} to 'Running'
Promoting task {Save document} to 'Finished'
Promoting task {Export consensus of assembly '8' to 'T_hg19_1000g_consensus.fa'} to 'Finished', error 'Subtask {Assembly consensus worker} is failed: Unexpected query result code: 11 (database disk image is malformed)'
Task {Export consensus of assembly '8' to 'T_hg19_1000g_consensus.fa'} finished with error: Subtask {Assembly consensus worker} is failed: Unexpected query result code: 11 (database disk image is malformed)
Unregistering task: Export consensus of assembly '8' to 'T_hg19_1000g_consensus.fa'
Deleting task: Assembly consensus worker
Deleting task: Save document
Deleting task: Export consensus of assembly '8' to 'T_hg19_1000g_consensus.fa'
AppMemory: 248Mb; Locked memory AppResource: 160/6006; SQLite memory 128Mb, max 134Mb
DbiPool: Opening DBI. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, factory: SQLiteDbi
DbiPool: Opening DBI. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, factory: SQLiteDbi
DbiPool: decreasing reference count. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, ref-count: 2
DbiPool: decreasing reference count. Url: C:/Users/MUHAMM~1/AppData/Local/Temp/ugene_tmp/p5952/session_0.ugenedb, ref-count: 1
Registering new task: Calculate assembly coverage
Assembly: reads 2D select time: 0.86505 seconds
Assembly: reads 2D load time: 2.09812
Assembly: drawing reads (28302 bases)   : 2.10712 seconds
Promoting task {Calculate assembly coverage} to 'Prepared'
AppResource Threads ::tryAcquire 1, available 999
Promoting task {Calculate assembly coverage} to 'Running'
AppResource Threads ::release 1, available 998
Promoting task {Calculate assembly coverage} to 'Finished'
Unregistering task: Calculate assembly coverage
Deleting task: Calculate assembly coverage
Assembly: reads 2D select time: 0 seconds
Assembly: reads 2D load time: 0.003
Assembly: drawing reads (28302 bases)   : 0.011001 seconds
Window activation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
AppMemory: 248Mb; Locked memory AppResource: 160/6006; SQLite memory 128Mb, max 134Mb
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8
Project view now listens object events in 'T_hg19_1000g.bam [as] 8' view
Assembly: reads 2D select time: 0 seconds
Assembly: reads 2D load time: 0.003
Assembly: drawing reads (28302 bases)   : 0.011001 seconds
Window deactivation, no MDI context switch, window: 'T_hg19_1000g.bam [as] 8'
Updating active status for T_hg19_1000g.bam.ugenedb
Updating active status for [as] 8