blastx BLASTX 2.2.30+ Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. /Users/oigl/Desktop/murinedb2/murine_revcompl_amino Query_1 NC_001363 5833 BLOSUM62 10 11 1 L; 1 Query_1 NC_001363 5833 1 gnl|BL_ORD_ID|0 NC_001363_revcompl_rev 0 1944 1 3516.86 9118 0 2 5833 1 1944 -1 0 1944 1944 0 1944 NERPPSWVVNHSEETLPRNSETTIRMQTARGFIGNTGTRATQSIGRLARRVRGCGLFYXXXXXXXXXXXXXAN*LVSSNKVQGHFQVLGAPWKHLMIH*KLLRAGPHLGTICSWPRAGAGTAYHRYPVWPITQLSHLFLALSRGRNRLPQISCLVFSCFFVPDLDLNFSILSYVFFHALQSGVT*ASLPPTGGVFHSPLFLETK*NXXXXXXXXXXXXXXXXXXXXXXXLDH*YPVFNKLD*SIKNAGSEEQNH*EYNKGSHKK*TETKAYLYTGSMESA*CPSESLEVPLEQFCTRPLQAAGLPAALDDVLQCLSSQGGGEHRSCQ*GTQIVGYHCILHVLRFAGVRHLSGSHLPQGDSKRVDVSFGRGNLSF*DLRSLVRVRAPYVGRGRLPAPQNLQLLGAAEVTDLTNVLLTNQNVRWLQVQVQNAL*VEKKQAVNNI*GILEALPQT*LFSAAERLR*AGGIVDDLV*SHVAPKLHDYGT*AVGVFGRARAGSHNPNYVVVA*SCNVQFSPETPLGCT*VLGALVYLLDGHRNTVVSGFVHRAKPSRAQPMHQTYLFPVYGEPGQPAWQSGSPRRSGPQEELPCLPRGHQRNAAGPRVYRWRQLTREVATQA*RRRHYTLRWDSHMRH*GEMIRNSQGSLGAWR*MRHVSLEDGPVVLGRLPPEVSRLRAGLSREPVCELGERGC**LLSCQGQGSLQGAGVPHIRSHMG*GHGGPACCGLDTGLRGVGAPSP*SQLQALI*LKSP*WFYLFFLPGLSFGVCMHNVISNQSPTDRPLSDSPWRRRQAHCQFPIPEACRTWGRFTTLAVFFLGWEGFSVSVVTAAPALRCPSCKRLLPSVYQXXXXXXXXXXXXXXXVP*ASARISRQLCCSPFSGSGSSVAGFRATTGLNWTRSVSKSKA***VIRALESQRSGGCLTSASTAWGARMTSGCPMVSLPASFVSTAMAATIRRQGGHPAATGSSCLDR*ATGRRQGPSFCVRTPLA*PCFSSTKSSKGLVKSGNPRAGAVRRTCLIS**AFCWSGPQYLPGR*RVAPRL*GLSWVQGGAPDPDLPSHLGSGGRSGVLVPEVLVVSWDNL*PSALVLRSRYTGRSRVGTSFVLLPVYPVSVH*RQWPIACSSLYVSYDLFLSLSAHPLSYGVLPFPLFLS*YVPLFLPGFLVY*RSFLPL*PNLQASCFSNLLTSLTFSQCLGQTAK*KT*TH*FLALGPQGHKECTCDRLP*VSLGRPRETHWALVLFLLPWPNWWGFCPRFGDPL*ATGDSGLGGSYLPGWCTPSLGARGEKRHRLHWAVEWGAXXXXXXXXXXXXXXXXXXPRSAESPTAADSRPRWADG**GQTRSELSVYLDLQKKKGYYFSSCKGQKRRTASIEAVRFLLCGGGMPAR*WSRPQGAPVSHAGEMPLGRGPVPLPQGSLLHYLRPCRKGVVLGPYKXXXXXXXXXXXAPHCQKELEV*VWRPKKE*GLDKGRIEAGSKEEVQGGETARMXXXXXXX*GVQRA*PREGGQKPRLPRSRCRGPGLGVHAGQVKRP*S*PG**GLGXXXXXXXXXXXXXXXXXXXR*PNVSS*HLPTGCERAARHLSSDLRSNLREW*QSGPYFQTNTETQSDRDNTERCCSRQDARLRFQTESKNSDGGGNCFRFSSPTRTTYPDGVGFHIDSLPQVGPQKRPPKSLGRLPGLRPGVQNSSVPPRVRQIQSMLAN*YRRRRITSNIDTRQSDRHR*VAGQLTSRWWVGGPWAGVSKSRTSPQMKDPRRG*SITQRRPSQGTARPRFGCKQQEALLGIRVPGRRSLSEDWRAE*GVVGSFIELGERKRANRSEKRTDWLVQIRYRVIFRSLGHPGNI**FTRNC*GLDRIWGPSVLGPEPGQELLTTDILFGPSLSCLICSWP*AGAGTAYHRYPVWYSAVSXXXXXXXXXXFSVMYFSMPCKVALLKLACHLRVGSFI NERPPSWVVNHSEETLPRNSETTIRMQTARGFIGNTGTRATQSIGRLARRVRGCGLFY*ARRAEAREQKREAN*LVSSNKVQGHFQVLGAPWKHLMIH*KLLRAGPHLGTICSWPRAGAGTAYHRYPVWPITQLSHLFLALSRGRNRLPQISCLVFSCFFVPDLDLNFSILSYVFFHALQSGVT*ASLPPTGGVFHSPLFLETK*NLLF*LWLVLYRLQLVILLSQS*SLDH*YPVFNKLD*SIKNAGSEEQNH*EYNKGSHKK*TETKAYLYTGSMESA*CPSESLEVPLEQFCTRPLQAAGLPAALDDVLQCLSSQGGGEHRSCQ*GTQIVGYHCILHVLRFAGVRHLSGSHLPQGDSKRVDVSFGRGNLSF*DLRSLVRVRAPYVGRGRLPAPQNLQLLGAAEVTDLTNVLLTNQNVRWLQVQVQNAL*VEKKQAVNNI*GILEALPQT*LFSAAERLR*AGGIVDDLV*SHVAPKLHDYGT*AVGVFGRARAGSHNPNYVVVA*SCNVQFSPETPLGCT*VLGALVYLLDGHRNTVVSGFVHRAKPSRAQPMHQTYLFPVYGEPGQPAWQSGSPRRSGPQEELPCLPRGHQRNAAGPRVYRWRQLTREVATQA*RRRHYTLRWDSHMRH*GEMIRNSQGSLGAWR*MRHVSLEDGPVVLGRLPPEVSRLRAGLSREPVCELGERGC**LLSCQGQGSLQGAGVPHIRSHMG*GHGGPACCGLDTGLRGVGAPSP*SQLQALI*LKSP*WFYLFFLPGLSFGVCMHNVISNQSPTDRPLSDSPWRRRQAHCQFPIPEACRTWGRFTTLAVFFLGWEGFSVSVVTAAPALRCPSCKRLLPSVYQVWSASGSGWSVRSGRVP*ASARISRQLCCSPFSGSGSSVAGFRATTGLNWTRSVSKSKA***VIRALESQRSGGCLTSASTAWGARMTSGCPMVSLPASFVSTAMAATIRRQGGHPAATGSSCLDR*ATGRRQGPSFCVRTPLA*PCFSSTKSSKGLVKSGNPRAGAVRRTCLIS**AFCWSGPQYLPGR*RVAPRL*GLSWVQGGAPDPDLPSHLGSGGRSGVLVPEVLVVSWDNL*PSALVLRSRYTGRSRVGTSFVLLPVYPVSVH*RQWPIACSSLYVSYDLFLSLSAHPLSYGVLPFPLFLS*YVPLFLPGFLVY*RSFLPL*PNLQASCFSNLLTSLTFSQCLGQTAK*KT*TH*FLALGPQGHKECTCDRLP*VSLGRPRETHWALVLFLLPWPNWWGFCPRFGDPL*ATGDSGLGGSYLPGWCTPSLGARGEKRHRLHWAVEWGAHHRPAPPF*PLRAPVVFLPRSAESPTAADSRPRWADG**GQTRSELSVYLDLQKKKGYYFSSCKGQKRRTASIEAVRFLLCGGGMPAR*WSRPQGAPVSHAGEMPLGRGPVPLPQGSLLHYLRPCRKGVVLGPYKAGGLL*VGR*AAPHCQKELEV*VWRPKKE*GLDKGRIEAGSKEEVQGGETARMEEEEAEA*GVQRA*PREGGQKPRLPRSRCRGPGLGVHAGQVKRP*S*PG**GLG*RCRLAAIRR*RLAILQSRR*PNVSS*HLPTGCERAARHLSSDLRSNLREW*QSGPYFQTNTETQSDRDNTERCCSRQDARLRFQTESKNSDGGGNCFRFSSPTRTTYPDGVGFHIDSLPQVGPQKRPPKSLGRLPGLRPGVQNSSVPPRVRQIQSMLAN*YRRRRITSNIDTRQSDRHR*VAGQLTSRWWVGGPWAGVSKSRTSPQMKDPRRG*SITQRRPSQGTARPRFGCKQQEALLGIRVPGRRSLSEDWRAE*GVVGSFIELGERKRANRSEKRTDWLVQIRYRVIFRSLGHPGNI**FTRNC*GLDRIWGPSVLGPEPGQELLTTDILFGPSLSCLICSWP*AGAGTAYHRYPVWYSAVSLFLTLI*TFLFSVMYFSMPCKVALLKLACHLRVGSFI NERPPSWVVNHSEETLPRNSETTIRMQTARGFIGNTGTRATQSIGRLARRVRGCGLFY*ARRAEAREQKREAN*LVSSNKVQGHFQVLGAPWKHLMIH*KLLRAGPHLGTICSWPRAGAGTAYHRYPVWPITQLSHLFLALSRGRNRLPQISCLVFSCFFVPDLDLNFSILSYVFFHALQSGVT*ASLPPTGGVFHSPLFLETK*NLLF*LWLVLYRLQLVILLSQS*SLDH*YPVFNKLD*SIKNAGSEEQNH*EYNKGSHKK*TETKAYLYTGSMESA*CPSESLEVPLEQFCTRPLQAAGLPAALDDVLQCLSSQGGGEHRSCQ*GTQIVGYHCILHVLRFAGVRHLSGSHLPQGDSKRVDVSFGRGNLSF*DLRSLVRVRAPYVGRGRLPAPQNLQLLGAAEVTDLTNVLLTNQNVRWLQVQVQNAL*VEKKQAVNNI*GILEALPQT*LFSAAERLR*AGGIVDDLV*SHVAPKLHDYGT*AVGVFGRARAGSHNPNYVVVA*SCNVQFSPETPLGCT*VLGALVYLLDGHRNTVVSGFVHRAKPSRAQPMHQTYLFPVYGEPGQPAWQSGSPRRSGPQEELPCLPRGHQRNAAGPRVYRWRQLTREVATQA*RRRHYTLRWDSHMRH*GEMIRNSQGSLGAWR*MRHVSLEDGPVVLGRLPPEVSRLRAGLSREPVCELGERGC**LLSCQGQGSLQGAGVPHIRSHMG*GHGGPACCGLDTGLRGVGAPSP*SQLQALI*LKSP*WFYLFFLPGLSFGVCMHNVISNQSPTDRPLSDSPWRRRQAHCQFPIPEACRTWGRFTTLAVFFLGWEGFSVSVVTAAPALRCPSCKRLLPSVYQVWSASGSGWSVRSGRVP*ASARISRQLCCSPFSGSGSSVAGFRATTGLNWTRSVSKSKA***VIRALESQRSGGCLTSASTAWGARMTSGCPMVSLPASFVSTAMAATIRRQGGHPAATGSSCLDR*ATGRRQGPSFCVRTPLA*PCFSSTKSSKGLVKSGNPRAGAVRRTCLIS**AFCWSGPQYLPGR*RVAPRL*GLSWVQGGAPDPDLPSHLGSGGRSGVLVPEVLVVSWDNL*PSALVLRSRYTGRSRVGTSFVLLPVYPVSVH*RQWPIACSSLYVSYDLFLSLSAHPLSYGVLPFPLFLS*YVPLFLPGFLVY*RSFLPL*PNLQASCFSNLLTSLTFSQCLGQTAK*KT*TH*FLALGPQGHKECTCDRLP*VSLGRPRETHWALVLFLLPWPNWWGFCPRFGDPL*ATGDSGLGGSYLPGWCTPSLGARGEKRHRLHWAVEWGAHHRPAPPF*PLRAPVVFLPRSAESPTAADSRPRWADG**GQTRSELSVYLDLQKKKGYYFSSCKGQKRRTASIEAVRFLLCGGGMPAR*WSRPQGAPVSHAGEMPLGRGPVPLPQGSLLHYLRPCRKGVVLGPYKAGGLL*VGR*AAPHCQKELEV*VWRPKKE*GLDKGRIEAGSKEEVQGGETARMEEEEAEA*GVQRA*PREGGQKPRLPRSRCRGPGLGVHAGQVKRP*S*PG**GLG*RCRLAAIRR*RLAILQSRR*PNVSS*HLPTGCERAARHLSSDLRSNLREW*QSGPYFQTNTETQSDRDNTERCCSRQDARLRFQTESKNSDGGGNCFRFSSPTRTTYPDGVGFHIDSLPQVGPQKRPPKSLGRLPGLRPGVQNSSVPPRVRQIQSMLAN*YRRRRITSNIDTRQSDRHR*VAGQLTSRWWVGGPWAGVSKSRTSPQMKDPRRG*SITQRRPSQGTARPRFGCKQQEALLGIRVPGRRSLSEDWRAE*GVVGSFIELGERKRANRSEKRTDWLVQIRYRVIFRSLGHPGNI**FTRNC*GLDRIWGPSVLGPEPGQELLTTDILFGPSLSCLICSWP*AGAGTAYHRYPVWYSAVSLFLTLI*TFLFSVMYFSMPCKVALLKLACHLRVGSFI 2 24.2534 51 0.201799 3893 4012 1123 1160 2 0 15 20 2 40 CSQTSLAVPNHFSLVSHVTVPSEGVMPSPLSLCRYLPREL CSSLYVSYDLFLSLSAHPL--SYGVLPFPLFLS*YVPLFL CS ++ SL +H S GV+P PL L Y+P L 3 21.9422 45 1.11186 1883 2086 916 981 2 0 21 31 2 68 KKNNGCS*RLERRCGAMMGAPLNCPMKSMPLFPSSAQTGSTPPRQVGTT*STIASCS*RVSKTRAEAP QRSGGCLTSASTAWGARMTS--GCPMVSLPASFVSTAMAATIRRQGGHPAATGSSCLDR*ATGRRQGP +++ GC GA M + CPM S+P S +T RQ G +T +SC R + R + P 4 18.0902 35 5.66085 1488 1511 1296 1303 3 0 6 7 0 8 QWGAAHRP EWGAHHRP +WGA HRP 5 16.5494 31 5.66085 1441 1464 1277 1284 1 0 6 7 0 8 LTPSLGAK CTPSLGAR TPSLGA+ 6 19.2458 38 7.1225 2097 2156 1214 1235 3 0 13 14 2 22 QGKRNNT--RAQ*VSLGLPRET QGHKECTCDRLP*VSLGRPRET QG + T R *VSLG PRET 7 19.2458 38 7.18641 1646 1705 569 586 2 0 10 11 2 20 GSPLWPTPLPRRHSPSAQEE GQPAWQSGSPRRSGP--QEE G P W + PRR P QEE 1 1944 54 3572100 0.041 0.267 0.14