LOCUS       ABCGTD010000000           23 rc    DNA     linear   BCT 03-SEP-2021
DEFINITION  Listeria monocytogenes strain PNUSAL011489, whole genome shotgun
            sequencing project.
ACCESSION   ABCGTD000000000
VERSION     ABCGTD000000000.1
DBLINK      BioProject: PRJNA212117
            BioSample: SAMN21207824
            Sequence Read Archive: SRR15701498
KEYWORDS    WGS; GMI.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23)
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2021) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
COMMENT     The Listeria monocytogenes whole genome shotgun (WGS) project has
            the project accession ABCGTD000000000.  This version of the project
            (01) has the accession number ABCGTD010000000, and consists of
            sequences ABCGTD010000001-ABCGTD010000023.
            The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 02-SEP-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001122375.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001122375.1
            Genome Coverage       :: 81x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/02/2021 21:25:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,145
            CDSs (total)                      :: 3,073
            Genes (coding)                    :: 3,053
            CDSs (with protein)               :: 3,053
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 9 of 20
            Pseudo Genes (incomplete)         :: 9 of 20
            Pseudo Genes (internal stop)      :: 3 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /strain="PNUSAL011489"
                     /db_xref="taxon:1639"
                     /collection_date="2021"
WGS         ABCGTD010000001-ABCGTD010000023
//