UGENE Test Report

state: failed
fail_desc: Test failed
source_file:C:/src/ugene2/tests/unit_tests/ApiTest/external_script/base_scheme_interface/CInterfaceManualTests.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0001.xml/bowtie2_1/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0001.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0002.xml/bowtie2_2/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0002.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0003.xml/bowtie2_3/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0003.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0004.xml/bowtie2_4/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0004.xml

state: failed
fail_desc: Subtask {compare-two-sams-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0005.xml/bowtie2_5/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0005.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0006.xml/bowtie2_6/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0006.xml

state: failed
fail_desc: Subtask {compare-two-sams-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0007.xml/bowtie2_7/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0007.xml

state: failed
fail_desc: Subtask {compare-two-sams-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0008.xml/bowtie2_8/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0008.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0009.xml/bowtie2_9/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0009.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0010.xml/bowtie2_10/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0010.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0011.xml/bowtie2_11/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0011.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0012.xml/bowtie2_12/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0012.xml

state: failed
fail_desc: Subtask {compare-sam-by-length} is failed: Fail to open "C:/src/test/general_???????_?????/_tmp/Bowtie2_plugin_tests/workflow_designer_test_0013.xml/bowtie2_13/bowtie/out.sam" for reading
source_file:C:/src/ugene2/tests/bowtie2/workflow_designer/test_0013.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/custom/6297/test_0001.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error: no task to run
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/bedtools/test_0017.xml

state: failed
fail_desc: Subtask {load-document} is failed: The file does not contain valid annotations!
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/bedtools/test_0026.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_blastp_maxhits.xml/blastp_maxhits.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/blastp_maxhits.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_comp_based_stats.xml/blastp_maxhits.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/comp_based_stats.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_query_begin.xml/blast-search_qbegin_tmp_begin.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/query_begin.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_query_circ_junction_mix.xml/blast-search_nucl_tr_DNA_circj_tmp.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/query_circ_junction_mix.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_query_circ_junction_nucl.xml/blast-search_nucl_DNA_circj_tmp.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/query_circ_junction_nucl.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_query_circ_junction_prot.xml/blast-search_prot_DNA_circj_tmp.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/query_circ_junction_prot.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_query_end.xml/blast-search_qend_tmp_end.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/query_end.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_query_middle.xml/blast-search_tmp_middle.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/query_middle.xml

state: failed
fail_desc: Subtask {load-document} is failed: Error opening file for reading: 'C:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/external-tool-support_blast_tblastx.xml/blastp_3168.gb'
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/blast/tblastx.xml

state: failed
fail_desc: Subtask {spades-task-input-type} is failed: Desired parameter -t 16 not found
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/input_type/test_0001.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/test_0001.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/test_0002.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/test_0003.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/test_0004.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/test_0005.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/test_0006.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/external-tool-support/spades/test_0007.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error: no task to run
source_file:C:/src/ugene2/tests/cmdline/common/extract_consensus_sequence/sample/test_0001.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error: no task to run
source_file:C:/src/ugene2/tests/cmdline/common/filter_bam/test_0006.xml

state: failed
fail_desc: Subtask {compare-annotations-num-in-two-objects} is failed: Number of objects in doc mismatches: [doc1=1] vs [doc2=2] Last good object: GXL_141619
source_file:C:/src/ugene2/tests/cmdline/common/find-ptrn/test_0008.xml

state: failed
fail_desc: Subtask {compare-annotations-num-in-two-objects} is failed: Number of objects in doc mismatches: [doc1=1] vs [doc2=2] Last good object: SEQUENCE_ACGTMRWSYKVHDBNX-
source_file:C:/src/ugene2/tests/cmdline/common/find-ptrn/test_0009.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/index_reuse/test_0002.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/index_reuse/test_0005.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/index_reuse/test_0006.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/index_reuse/test_0008.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/index_reuse/test_0009.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/index_reuse/test_0011.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/index_reuse/test_0012.xml

state: failed
fail_desc: Subtask {compare-docs} is failed: The files 'c:/src/test/general_��_��/_common_data/cmdline/multiplexer/result_1_1_n_eq_m.txt' and 'c:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/multiplexer_test_0001.xml/multiplexer_0001.txt' are not equal at line 0.The first file contains 'string4 ' and the second contains 'string4 '!
source_file:C:/src/ugene2/tests/cmdline/common/multiplexer/test_0001.xml

state: failed
fail_desc: Subtask {compare-docs} is failed: The files 'c:/src/test/general_��_��/_common_data/cmdline/multiplexer/result_1_1_n_gt_m.txt' and 'c:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/multiplexer_test_0002.xml/multiplexer_0002.txt' are not equal at line 0.The first file contains 'string4 ' and the second contains 'string4 '!
source_file:C:/src/ugene2/tests/cmdline/common/multiplexer/test_0002.xml

state: failed
fail_desc: Subtask {compare-docs} is failed: The files 'c:/src/test/general_��_��/_common_data/cmdline/multiplexer/result_1_1_n_le_m.txt' and 'c:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/multiplexer_test_0003.xml/multiplexer_0003.txt' are not equal at line 0.The first file contains 'string1 ' and the second contains 'string1 '!
source_file:C:/src/ugene2/tests/cmdline/common/multiplexer/test_0003.xml

state: failed
fail_desc: Subtask {compare-docs} is failed: The files 'c:/src/test/general_��_��/_common_data/cmdline/multiplexer/result_1_many_n_and_m.txt' and 'c:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/multiplexer_test_0004.xml/multiplexer_0004.txt' are not equal at line 0.The first file contains 'string4 ' and the second contains 'string4 '!
source_file:C:/src/ugene2/tests/cmdline/common/multiplexer/test_0004.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Expected message not found in output
source_file:C:/src/ugene2/tests/cmdline/common/pcr/test_0008.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error: no task to run
source_file:C:/src/ugene2/tests/cmdline/common/primers-grouper/test_0001.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error: no task to run
source_file:C:/src/ugene2/tests/cmdline/common/primers-grouper/test_0002.xml

state: failed
fail_desc: Subtask {compare-sequences-in-two-objects} is failed: Number of objects in doc mismatches: [doc1=2] vs [doc2=1] Last good object: A0N8V2_SHEEP features
source_file:C:/src/ugene2/tests/cmdline/common/read_db/test_0007.xml

state: failed
fail_desc: Subtask {compare-sequences-in-two-objects} is failed: Number of objects in doc mismatches: [doc1=2] vs [doc2=1] Last good object: D0VTW9_9INFA features
source_file:C:/src/ugene2/tests/cmdline/common/read_db/test_0009.xml

state: failed
fail_desc: Subtask {compare-docs} is failed: The files 'c:/src/test/general_��_��/_common_data/vcf/exportedToSNP.snp' and 'c:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/read_variations_test_0005.xml/write_variations_0005.snp' are not equal at line 0.The first file contains 'II 2475 cc c ' and the second contains 'II 2475 cc c . 16.6 . INDEL;DP=21;VDB=0.0800;AF1=0.5;AC1=1;DP4=3,5,6,5;MQ=40;FQ=19.5;PV4=0.65,2.5e-10,5.9e-24,0.2 GT:PL:GQ 0/1:54,0,106:57 '!
source_file:C:/src/ugene2/tests/cmdline/common/read_variations/test_0005.xml

state: failed
fail_desc: Subtask {compare-docs} is failed: The files 'c:/src/test/general_��_��/_common_data/vcf/exportedToSNP.snp' and 'c:/src/test/general_��_��/_tmp/CMDLine_ugene_common_tests/read_variations_test_0007.xml/write_variations_0007.snp' are not equal at line 0.The first file contains 'II 2475 cc c ' and the second contains 'II 2475 cc c . 16.6 . INDEL;DP=21;VDB=0.0800;AF1=0.5;AC1=1;DP4=3,5,6,5;MQ=40;FQ=19.5;PV4=0.65,2.5e-10,5.9e-24,0.2 GT:PL:GQ 0/1:54,0,106:57 '!
source_file:C:/src/ugene2/tests/cmdline/common/read_variations/test_0007.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/stringtie/test_0001.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/stringtie/test_0002.xml

state: failed
fail_desc: Subtask {run-cmdline} is failed: Process finished with error:
source_file:C:/src/ugene2/tests/cmdline/common/stringtie/test_0003.xml

state: failed
fail_desc: Subtask {plugin_primer_3} is failed: Subtask {Pick primers task} is failed: Cannot open internal oligo mishyb library c:/src/test/general_???????_?????/_common_data/primer3/not_for_production.lib
source_file:C:/src/ugene2/tests/primer3/obj_fn/io_rep_sim.xml

state: failed
fail_desc: Subtask {plugin_primer_3} is failed: Subtask {Pick primers task} is failed: Cannot open mispriming library c:/src/test/general_???????_?????/_common_data/primer3/not_for_production.lib
source_file:C:/src/ugene2/tests/primer3/obj_fn/pair_rep_sim.xml