UGENE Test Report
   generated by UGENE
   Вт июн 28 2022 23:38:50, total run time: 4304s
Test suiteTestsPassedFailedExcludedSuccess Rate
API tests 34 33 1 0 97%
Annotation utils tests 9 9 0 0 100%
Annotator plugin tests 49 49 0 0 100%
Bowtie plugin tests 21 1 20 0 4%
Bowtie2 plugin tests 13 0 13 0 0%
Bwa plugin tests 36 1 35 0 2%
CMDLine ugene common tests 599 499 100 48 83%
Dna export plugin tests 13 13 0 0 100%
Document format tests 654 654 0 0 100%
Edit alignment tests 11 11 0 0 100%
Edit sequence tests 39 39 0 0 100%
Enzymes plugin tests 34 34 0 0 100%
Find algorithm tests 46 46 0 0 100%
Find pattern in alignment 6 6 0 0 100%
Format detection 29 29 0 0 100%
GUrl file URL canonicalization tests 1 1 0 0 100%
Genome Aligner Tests 4 4 0 4 100%
HMM2 plugin tests 63 63 0 0 100%
HMM2 plugin tests: sse optimized hmmsearch 41 41 0 0 100%
HMM3 plugin tests 119 0 119 0 0%
Kalign plugin precommt tests 26 26 0 0 100%
Multiple alignment consensus algorithms tests 7 7 0 0 100%
ORFMarker plugin tests 40 40 0 0 100%
Position weight matrix tests 20 20 0 0 100%
Primer 3 tests 997 910 87 0 91%
Query designer test suite 3 3 0 0 100%
Realign sequences in alignment 12 12 0 0 100%
Regression suite 47 33 14 5 70%
Repeat finder long tests 4 4 0 0 100%
Repeat finder tests 207 207 0 0 100%
SecStructPredict plugin tests 10 10 0 4 100%
SequenceWalker tests 10 10 0 0 100%
Sitecon tests 12 12 0 0 100%
Smith Waterman Tests SEE2 35 35 0 0 100%
Smith Waterman Tests SEE2 big and long test 5 5 0 0 100%
Smith Waterman Tests classic 2 35 35 0 0 100%
Smith Waterman Tests classic 2 big and long test 5 5 0 0 100%
Substitution matrices tests 85 85 0 0 100%
Task tests 11 11 0 0 100%
neighbor join tests 16 16 0 0 100%
uMuscle parallel plugin tests 36 36 0 0 100%
uMuscle serial plugin tests 36 36 0 0 100%
Total 3480 3091 389 61 88%


API tests
external_script/base_scheme_interface/CInterfaceManualTests.xml
Bowtie plugin tests
parameters/maqerr/Test_0001.xml
parameters/maxbts/Test_0001.xml
parameters/n_mode/Test_0001.xml
parameters/n_mode/Test_0002.xml
parameters/n_mode/Test_0003.xml
parameters/nofw/Test_0001.xml
parameters/nomaqround/Test_0001.xml
parameters/norc/Test_0001.xml
parameters/seedlen/Test_0001.xml
parameters/tryhard/Test_0001.xml
parameters/v_mode/Test_0001.xml
parameters/v_mode/Test_0002.xml
quality/Test_0001.xml
quality/Test_0002.xml
quality/Test_0003.xml
workflow_designer/bowtie_aligner/test_0001.xml
Test_0001.xml
Test_0002.xml
Test_0003.xml
Test_0004.xml
Bowtie2 plugin tests
workflow_designer/test_0001.xml
workflow_designer/test_0002.xml
workflow_designer/test_0003.xml
workflow_designer/test_0004.xml
workflow_designer/test_0005.xml
workflow_designer/test_0006.xml
workflow_designer/test_0007.xml
workflow_designer/test_0008.xml
workflow_designer/test_0009.xml
workflow_designer/test_0010.xml
workflow_designer/test_0011.xml
workflow_designer/test_0012.xml
workflow_designer/test_0013.xml
Bwa plugin tests
parameters/barcode-length/Test_0001.xml
parameters/best-hits/Test_0001.xml
parameters/gap-open-penalty/Test_0001.xml
parameters/long-scaled-gap-penalty-for-long-deletions/Test_0001.xml
parameters/max-gap-opens/Test_0001.xml
parameters/max-queue-entries/Test_0001.xml
parameters/max-seed-differences/Test_0001.xml
parameters/mismatch-penalty/Test_0001.xml
parameters/n/Test_0001.xml
parameters/n/Test_0002.xml
quality/Test_0001.xml
quality/Test_0002.xml
workflow/bwa_aln/test_0001.xml
workflow/bwa_aln/test_0002.xml
workflow/bwa_aln/test_0003.xml
workflow/bwa_aln/test_0004.xml
workflow/bwa_aln/test_0005.xml
workflow/bwa_aln/test_0006.xml
workflow/bwa_aln/test_0008.xml
workflow/bwa_aln/test_0009.xml
workflow/bwa_aln/test_0010.xml
workflow/multiple_files_with_reads/test_0001.xml
workflow/multiple_files_with_reads/test_0002.xml
workflow/test_0001.xml
workflow/test_0002.xml
workflow/test_0003.xml
workflow/test_0004.xml
workflow/test_0005.xml
Test_0001.xml
Test_0002.xml
Test_0003.xml
Test_0004.xml
Test_0005.xml
Test_0006.xml
Test_0007.xml
CMDLine ugene common tests
custom/6297/test_0001.xml
external-tool-support/bedtools/test_0001.xml
external-tool-support/bedtools/test_0002.xml
external-tool-support/bedtools/test_0003.xml
external-tool-support/bedtools/test_0004.xml
external-tool-support/bedtools/test_0005.xml
external-tool-support/bedtools/test_0006.xml
external-tool-support/bedtools/test_0007.xml
external-tool-support/bedtools/test_0008.xml
external-tool-support/bedtools/test_0009.xml
external-tool-support/bedtools/test_0010.xml
external-tool-support/bedtools/test_0011.xml
external-tool-support/bedtools/test_0012.xml
external-tool-support/bedtools/test_0013.xml
external-tool-support/bedtools/test_0014.xml
external-tool-support/bedtools/test_0015.xml
external-tool-support/bedtools/test_0016.xml
external-tool-support/bedtools/test_0017.xml
external-tool-support/bedtools/test_0018.xml
external-tool-support/bedtools/test_0019.xml
external-tool-support/bedtools/test_0020.xml
external-tool-support/bedtools/test_0021.xml
external-tool-support/bedtools/test_0023.xml
external-tool-support/bedtools/test_0024.xml
external-tool-support/bedtools/test_0025.xml
external-tool-support/bedtools/test_0026.xml
external-tool-support/blast/negative/test_0005.xml
external-tool-support/blast/blastp_maxhits.xml
external-tool-support/blast/comp_based_stats.xml
external-tool-support/blast/query_begin.xml
external-tool-support/blast/query_begin_xml_output.xml
external-tool-support/blast/query_circ_junction_mix.xml
external-tool-support/blast/query_circ_junction_nucl.xml
external-tool-support/blast/query_circ_junction_prot.xml
external-tool-support/blast/query_end.xml
external-tool-support/blast/query_middle.xml
external-tool-support/blast/tblastx.xml
external-tool-support/fastqc/test_0003.xml
external-tool-support/spades/input_type/test_0001.xml
external-tool-support/spades/input_type/test_0002.xml
external-tool-support/spades/input_type/test_0003.xml
external-tool-support/spades/input_type/test_0004.xml
external-tool-support/spades/input_type/test_0005.xml
external-tool-support/spades/input_type/test_0006.xml
external-tool-support/spades/input_type/test_0007.xml
external-tool-support/spades/input_type/test_0008.xml
external-tool-support/spades/input_type/test_0009.xml
external-tool-support/spades/input_type/test_0010.xml
external-tool-support/spades/input_type/test_0011.xml
external-tool-support/spades/input_type/test_0012.xml
external-tool-support/spades/input_type/test_0013.xml
external-tool-support/spades/input_type/test_0014.xml
external-tool-support/spades/input_type/test_0015.xml
external-tool-support/spades/input_type/test_0016.xml
external-tool-support/spades/input_type/test_0017.xml
external-tool-support/spades/input_type/test_0018.xml
external-tool-support/spades/test_0001.xml
external-tool-support/spades/test_0002.xml
external-tool-support/spades/test_0003.xml
external-tool-support/spades/test_0004.xml
external-tool-support/spades/test_0005.xml
external-tool-support/spades/test_0006.xml
external-tool-support/spades/test_0007.xml
extract_consensus_sequence/sample/test_0001.xml
extract_consensus_string/sample/test_0001.xml
filter_bam/test_0006.xml
hmm3/negative/test_0001.xml
hmm3/test_0001.xml
hmm3/test_0002.xml
hmm3/test_0003.xml
hmm3/test_0004.xml
hmm3/test_0005.xml
hmm3/test_0006.xml
index_reuse/test_0001.xml
index_reuse/test_0002.xml
index_reuse/test_0003.xml
index_reuse/test_0004.xml
index_reuse/test_0005.xml
index_reuse/test_0006.xml
index_reuse/test_0007.xml
index_reuse/test_0008.xml
index_reuse/test_0009.xml
index_reuse/test_0010.xml
index_reuse/test_0011.xml
index_reuse/test_0012.xml
multiplexer/test_0001.xml
multiplexer/test_0002.xml
multiplexer/test_0003.xml
multiplexer/test_0004.xml
pcr/test_0008.xml
primers-grouper/test_0001.xml
primers-grouper/test_0002.xml
read_variations/test_0005.xml
read_variations/test_0007.xml
stringtie/test_0001.xml
stringtie/test_0002.xml
stringtie/test_0003.xml
workflow_samples/raw_ngs/filter_unpaired/test_0001.xml
workflow_samples/raw_ngs/filter_unpaired/test_0003.xml
workflow_samples/raw_ngs/filter_unpaired/test_0005.xml
HMM3 plugin tests
common/hmm3_as_scheme/test_0001.xml
common/hmm3_as_scheme/test_0002.xml
common/hmm3_as_scheme/test_0003.xml
common/hmmbuild/default_options/test_1-cysPrx_C.xml
common/hmmbuild/default_options/test_14-3-3.xml
common/hmmbuild/default_options/test_2-Hacid_dh.xml
common/hmmbuild/default_options/test_2-Hacid_dh_C.xml
common/hmmbuild/default_options/test_2-oxoacid_dh.xml
common/hmmbuild/default_options/test_2_msa.xml
common/hmmbuild/default_options/test_5_msa.xml
common/hmmbuild/default_options/test_ABC_tran.xml
common/hmmbuild/default_options/test_ATP-synt_ab.xml
common/hmmbuild/default_options/test_Asp.xml
common/hmmbuild/default_options/test_Caudal_act.xml
common/hmmbuild/default_options/test_fn3.xml
common/hmmbuild/model_construction_fast/relative_weighting_blosum/test_eclust.xml
common/hmmbuild/model_construction_fast/relative_weighting_blosum/test_eclust2.xml
common/hmmbuild/model_construction_fast/relative_weighting_blosum/test_eent.xml
common/hmmbuild/model_construction_fast/relative_weighting_blosum/test_eent2.xml
common/hmmbuild/model_construction_fast/relative_weighting_blosum/test_enone.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_eclust.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_eclust2.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_eent.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_eent2.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_eent3.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_enone.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_enone2.xml
common/hmmbuild/model_construction_fast/relative_weighting_gsc/test_eset.xml
common/hmmbuild/model_construction_fast/relative_weighting_none/test_eclust.xml
common/hmmbuild/model_construction_fast/relative_weighting_none/test_eent.xml
common/hmmbuild/model_construction_fast/relative_weighting_none/test_eent2.xml
common/hmmbuild/model_construction_fast/relative_weighting_none/test_enone.xml
common/hmmbuild/model_construction_fast/relative_weighting_none/test_eset.xml
common/hmmbuild/model_construction_fast/relative_weighting_pb/test_eclust.xml
common/hmmbuild/model_construction_fast/relative_weighting_pb/test_eclust2.xml
common/hmmbuild/model_construction_fast/relative_weighting_pb/test_eent.xml
common/hmmbuild/model_construction_fast/relative_weighting_pb/test_eent2.xml
common/hmmbuild/model_construction_fast/relative_weighting_pb/test_enone.xml
common/hmmbuild/model_construction_hand/relative_weighting_blosum/test_eclust.xml
common/hmmbuild/model_construction_hand/relative_weighting_blosum/test_eclust2.xml
common/hmmbuild/model_construction_hand/relative_weighting_blosum/test_eent.xml
common/hmmbuild/model_construction_hand/relative_weighting_blosum/test_enone.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_eclust.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_eclust2.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_eent.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_eent2.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_eent3.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_enone.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_enone2.xml
common/hmmbuild/model_construction_hand/relative_weighting_gsc/test_eset.xml
common/hmmbuild/model_construction_hand/relative_weighting_none/test_eclust.xml
common/hmmbuild/model_construction_hand/relative_weighting_none/test_eent.xml
common/hmmbuild/model_construction_hand/relative_weighting_none/test_eent2.xml
common/hmmbuild/model_construction_hand/relative_weighting_none/test_enone.xml
common/hmmbuild/model_construction_hand/relative_weighting_none/test_eset.xml
common/hmmbuild/model_construction_hand/relative_weighting_pb/test_eclust.xml
common/hmmbuild/model_construction_hand/relative_weighting_pb/test_eclust2.xml
common/hmmbuild/model_construction_hand/relative_weighting_pb/test_eent.xml
common/hmmbuild/model_construction_hand/relative_weighting_pb/test_eent2.xml
common/hmmbuild/model_construction_hand/relative_weighting_pb/test_enone.xml
common/hmmsearch/general_search/acceleration_heuristics/amino_al/14-3-3_epsilon2.xml
common/hmmsearch/general_search/acceleration_heuristics/amino_al/asp_pepsin.xml
common/hmmsearch/general_search/acceleration_heuristics/amino_al/asp_pepsin2.xml
common/hmmsearch/general_search/acceleration_heuristics/amino_al/fn3_titin.xml
common/hmmsearch/general_search/default_options/amino_al/14-3-3_epsilon2.xml
common/hmmsearch/general_search/default_options/amino_al/PFAM_provided_model.xml
common/hmmsearch/general_search/default_options/amino_al/asp_pepsin.xml
common/hmmsearch/general_search/default_options/amino_al/asp_pepsin2.xml
common/hmmsearch/general_search/default_options/amino_al/fn3_titin.xml
common/hmmsearch/general_search/default_options/amino_al/no_hits.xml
common/hmmsearch/general_search/default_options/nucl_dna_al/COI.xml
common/hmmsearch/general_search/default_options/nucl_dna_al/COI2.xml
common/hmmsearch/general_search/default_options/nucl_dna_al/no_hits.xml
common/hmmsearch/general_search/default_options/nucl_dna_al/no_hits2.xml
common/hmmsearch/general_search/default_options/nucl_dna_al/simple.xml
common/hmmsearch/general_search/default_options/nucl_dna_al/simple_3.xml
common/hmmsearch/general_search/default_options/nucl_dna_al/tt_3.xml
common/hmmsearch/general_search/default_options/nucl_rna_al/COIdef.xml
common/hmmsearch/general_search/default_options/nucl_rna_al/COIext.xml
common/hmmsearch/general_search/default_options/nucl_rna_al/no_hits.xml
common/hmmsearch/general_search/default_options/nucl_rna_al/simple.xml
common/hmmsearch/general_search/eval_tresholds/amino_al/asp_pepsin.xml
common/hmmsearch/general_search/eval_tresholds/amino_al/asp_pepsin2.xml
common/hmmsearch/general_search/eval_tresholds/amino_al/fn3_titin.xml
common/hmmsearch/general_search/eval_tresholds/nucl_dna_al/COI2.xml
common/hmmsearch/general_search/eval_tresholds/nucl_rna_al/COIext.xml
common/hmmsearch/general_search/score_tresholds/amino_al/asp_pepsin.xml
common/hmmsearch/general_search/score_tresholds/amino_al/asp_pepsin2.xml
common/hmmsearch/general_search/score_tresholds/amino_al/fn3_titin.xml
common/hmmsearch/general_search/score_tresholds/nucl_dna_al/COI2.xml
common/hmmsearch/general_search/score_tresholds/nucl_rna_al/COIext.xml
common/phmmer/acceleration_heuristics/NT_078103_2.xml
common/phmmer/acceleration_heuristics/fib_simple.xml
common/phmmer/acceleration_heuristics/rnd.xml
common/phmmer/acceleration_heuristics/rnd2.xml
common/phmmer/default_options/NT_078103_2.xml
common/phmmer/default_options/NT_part.xml
common/phmmer/default_options/fib_simple.xml
common/phmmer/default_options/fibronectin1.2_1_titin.xml
common/phmmer/default_options/fibronectin1.2_2_titin.xml
common/phmmer/default_options/no_hits.xml
common/phmmer/default_options/rnd.xml
common/phmmer/default_options/rnd2.xml
common/phmmer/default_options/simple.xml
common/phmmer/default_options/test_05.xml
common/phmmer/eval_calibration/fibronectin1.2_1_titin.xml
common/phmmer/eval_calibration/rnd.xml
common/phmmer/eval_calibration/rnd2.xml
common/phmmer/eval_calibration/simple.xml
common/phmmer/eval_tresholds/fibronectin1.2_1_titin.xml
common/phmmer/eval_tresholds/no_hits.xml
common/phmmer/eval_tresholds/rnd.xml
common/phmmer/score_tresholds/NT_part.xml
common/phmmer/score_tresholds/fib_simple.xml
common/phmmer/score_tresholds/fibronectin1.2_2_titin.xml
common/phmmer/score_tresholds/no_hits.xml
common/phmmer/scoring_system/fib_simple.xml
common/phmmer/scoring_system/fibronectin1.2_1_titin.xml
common/phmmer/scoring_system/rnd.xml
Primer 3 tests
obj_fn/io_rep_sim.xml
obj_fn/pair_rep_sim.xml
obj_fn/rep_sim.xml
position_penalty/AT3_X1.xml
position_penalty/AT3_X2.xml
position_penalty/AT3_X3'.xml
position_penalty/AT3_X3.xml
position_penalty/AT3_X4.xml
position_penalty/AT3_X5.xml
position_penalty/AT3_X6.xml
position_penalty/CETP_X1.xml
position_penalty/CETP_X10.xml
position_penalty/CETP_X11.xml
position_penalty/CETP_X12.xml
position_penalty/CETP_X13.xml
position_penalty/CETP_X14.xml
position_penalty/CETP_X15.xml
position_penalty/CETP_X16.xml
position_penalty/CETP_X2.xml
position_penalty/CETP_X3.xml
position_penalty/CETP_X4.xml
position_penalty/CETP_X5.xml
position_penalty/CETP_X6.xml
position_penalty/CETP_X7.xml
position_penalty/CETP_X8.xml
position_penalty/CETP_X9.xml
position_penalty/F2R_X1.xml
position_penalty/F2R_X2-seg1.xml
position_penalty/F2R_X2-seg2.xml
position_penalty/F2_X1.xml
position_penalty/F2_X10.xml
position_penalty/F2_X11.xml
position_penalty/F2_X12.xml
position_penalty/F2_X13.xml
position_penalty/F2_X14.xml
position_penalty/F2_X2.xml
position_penalty/F2_X3.xml
position_penalty/F2_X4.xml
position_penalty/F2_X5.xml
position_penalty/F2_X6.xml
position_penalty/F2_X7.xml
position_penalty/F2_X8.xml
position_penalty/F2_X9.xml
position_penalty/F3_X1.xml
position_penalty/F3_X2.xml
position_penalty/F3_X3.xml
position_penalty/F3_X4.xml
position_penalty/F3_X5.xml
position_penalty/F3_X6.xml
position_penalty/F5_X10.xml
position_penalty/F7_X1.xml
position_penalty/F7_X2'.xml
position_penalty/F7_X2.xml
position_penalty/F7_X3.xml
position_penalty/F7_X4.xml
position_penalty/F7_X5.xml
position_penalty/F7_X6.xml
position_penalty/F7_X7.xml
position_penalty/F7_X8.xml
position_penalty/HCF2_X2.xml
position_penalty/HCF2_X3.xml
position_penalty/HCF2_X4.xml
position_penalty/HCF2_X5.xml
position_penalty/HMGCR_X1.xml
position_penalty/HMGCR_X10.xml
position_penalty/HMGCR_X11.xml
position_penalty/HMGCR_X12.xml
position_penalty/HMGCR_X13.xml
position_penalty/HMGCR_X14.xml
position_penalty/HMGCR_X15.xml
position_penalty/HMGCR_X16.xml
position_penalty/HMGCR_X17.xml
position_penalty/HMGCR_X18.xml
position_penalty/HMGCR_X19.xml
position_penalty/HMGCR_X2.xml
position_penalty/HMGCR_X20.xml
position_penalty/HMGCR_X3.xml
position_penalty/HMGCR_X4.xml
position_penalty/HMGCR_X5.xml
position_penalty/HMGCR_X6.xml
position_penalty/HMGCR_X7.xml
position_penalty/HMGCR_X8.xml
position_penalty/HMGCR_X9.xml
primer/SP01-06-with-repeat1.xml
primer/SP01-06-with-repeat2.xml
primer/SP01-06-with-repeat3.xml
primer_must_use/mispriming.xml
Regression suite
1441/test_0001.xml
4194/test_0001.xml
4194/test_0002.xml
4194/test_0003.xml
4194/test_0004.xml
4194/test_0005.xml
4194/test_0006.xml
4194/test_0007.xml
4194/test_0008.xml
4194/test_0009.xml
4194/test_0010.xml
4194/test_0011.xml
6579/test_0001.xml
6802/test_0001.xml