samtools_flags.png
[UGENE-4123] Create "Get unmapped reads" sample workflow Created: 04/Mar/15 Updated: 31/Oct/18 Resolved: 09/Mar/15 |
|
| Status: | Closed |
| Project: | UGENE |
| Component/s: | Workflow |
| Affects Version/s: | 1.16 |
| Fix Version/s: | 1.16.1 |
| Type: | Task | Priority: | Major |
| Reporter: | Olga Golosova | Assignee: | Yura Vaskin |
| Resolution: | Fixed | ||
| Labels: | NGS, request | ||
| Remaining Estimate: | Not Specified | ||
| Time Spent: | Not Specified | ||
| Original Estimate: | Not Specified | ||
| Attachments: |
samtools_flags.png
|
| Assigned Tester: | Denis Kandrov |
| Tests Type: | Functional/Unit |
| Affect Type: | Userdefined |
| Description |
|
See http://ugene.unipro.ru/forum/YaBB.pl?num=1425320889/2#2 It may be required to analyze unmapped reads:
So, a separate workflow sample can be created for this. For example, "Filter BAM/SAM files using samtools view" may be used for this, i.e. not to filter reads by a flag, but filter all other reads that do not have the flag. An additional parameter must be added for the worker for doing this. |
| Comments |
| Comment by Denis Kandrov [ 18/Mar/15 ] |
|
Checked. |
| Comment by Yuliya Algaer [ 31/Mar/15 ] |
|
Reviewed. |