[UGENE-6574] Support non-ASCII character when aligning a sequence to an alignment Created: 10/Sep/19  Updated: 24/Sep/19  Resolved: 10/Sep/19

Status: Closed
Project: UGENE
Component/s: Basic-MSA
Affects Version/s: 1.32
Fix Version/s: 34

Type: Bug Priority: Critical
Reporter: Olga Golosova Assignee: Unassigned
Resolution: Cannot Reproduce  
Labels: stability
Remaining Estimate: Not Specified
Time Spent: Not Specified
Original Estimate: Not Specified

Issue Links:
Relates
relates to UGENE-6541 Add possibility to realign sequence(s... Closed
relates to UGENE-6581 Update MAFFT to the most recent version Closed
Sprint: DEV-34-1
Affect Type: Userdefined

 Description   

Scenario:

  1. Make sure MAFFT external tool is set up.
  2. Open an alignment that contains a sequence with name that has non-ASCII characters (e.g. Russian).
  3. Click "Align sequence to this alignment" button on the toolbar and select some appropriate sequence.
    Expected result: the sequence has been aligned to the alignment.
    Current result: an error occurs, the following notification is pop up:
    'Align sequences to alignment task' task failed: Subtask {Align sequences to alignment task} is failed: Document is empty.
    

    In the "TRACE" category of the log there may be messages like:

    MAFFT: Distance 0-230 is strange, 13.304991.
    

The sequences should be temporarily renames when MAFFT is run. Note that a similar feature is used when multiple sequence alignment is done.

Check also other tasks: pairwise alignment, building a tree, etc.



 Comments   
Comment by Olga Golosova [ 10/Sep/19 ]

The feature works properly, the problems happened because of another reason - a sequence contain only one character "A". See sample data for UGENE-6581.

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