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  1. UGENE
  2. UGENE-1043

VCF full support

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.13
    • Component/s: None
    • Labels:
    • Tests Type:
      Functional/Unit
    • Epic Link:
    • Sprint:
      DEV-2013/09/05, DEV-2013/09/19, DEV-2013/09/26, DEV-2013/10/03, TEST-2013/10/10

      Description

      Currently, UGENE data structures to store variations are incomplete. So VCF format header and a few columns are lost.

      Improve the structures to an extent when read VCF-writeVCF operation doesn't cause to lose of data.

        Attachments

          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-1619 "Call variants" pipeline's result are different from console launch when -P is used

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-1477 VCF Format doesn't support comments and headers

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-1619 "Call variants" pipeline's result are different from console launch when -P is used

          • Major - Major loss of function.
          • Closed

          Task - A task that needs to be done. UGENE-2139 Add XML tests for VCF and simple SNP formats

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              artyom_s Artyom Savchenko
              Reporter:
              vaskin Yura Vaskin
              Assigned Tester:
              German Grekhov
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved:

                  Time Tracking

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