Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-1092

GPU-optimized UGENE Genome Aligner doesn't work on big samples of data

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.11
    • Fix Version/s: 1.13
    • Component/s: NGS
    • Environment:

      NVIDIA Corporation Tesla C2075, global mem: 6143 Mb, local mem: 48 Kb, max compute units: 14, max work group size: 1024, max frequency: 1147 Hz

    • Affect Type:
      Userdefined

      Description

      Sample data size is about 7GB.

      The following error occurs:

      [ERROR][19:55] OPENCL: clWaitForEvents 1; Error code (-5)
[ERROR][19:55] Task {DnaAssemblyMultiTask} finished with error: Subtask {DnaAssemblyToRefTask} is failed: Subtask {GenomeAlignerFindTask} is failed: OpenCL binary find error

        Attachments

          Activity

            People

            Assignee:
            rodionov Kirill Rodionov
            Reporter:
            oigl Olga Golosova
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: