When you try to open a SAM/BAM file in Read Assembly element then this file will be automatically converted to the sorted indexed BAM.
Corresponding files will be created in the same directory but with another name. Here is the table with file name transforms:
| Input file | Output files |
|---|---|
| sorted indexed bam | nothing |
| sorted bam without index: in.bam |
in.bam.bai |
| unsorted bam: in.bam |
in.bam.sorted.bam in.bam.sorted.bam.bai |
| sorted sam: in.sam |
in.sam.bam in.sam.bam.bai |
| unsorted sam: in.sam |
in.sam.bam in.sam.bam.sorted.bam in.sam.bam.sorted.bam.bai |
- blocks
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UGENE-1038 New WD type: assembly
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- Closed
-