Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-1181

Genome aligner OpenCL max short reads/reference sequence size per task

    XMLWordPrintable

    Details

    • Type: Task
    • Status: Closed
    • Priority: Trivial
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: NGS
    • Labels:
    • Affect Type:
      Userdefined

      Description

      The driver (NVIDIA, ATI) resets video card after detecting if kernel is running for a long time (>~1 sec).
      The current solution is - hardcode limits for OpenCL mode.

      The binary search benchmark should be performed on a particular OpenCL device, and limits set according to benchmark results.

        Attachments

          Activity

            People

            Assignee:
            Unassigned
            Reporter:
            shutov Shutov Ilya
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: