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  1. UGENE
  2. UGENE-1217

Crash when selecting sequence regions on UGENE 1.11.2

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Duplicate
    • Affects Version/s: 1.11.2
    • Fix Version/s: 1.11.3
    • Component/s: General
    • Environment:

      Linux 32bit

    • Affect Type:
      Userdefined

      Description

      Open a DNA sequence in FASTA format, press Ctrl+A to open the Region Seletion windows, input regions you want to select, then press "GO", UGENE crashes!

      The full log is:

      Exception with code 11 - Segmentation fault

      Operation system: Linux x86

      UGENE version: 1.11.2

      ActiveWindow: None

      Log:
      [14:45:26.739] [Tasks] promoting task

      {Open view} to 'Running'
      [14:45:26.739] [Tasks] promoting task {Open new 'Sequence view'} to 'Running'
      [14:45:26.740] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.740] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.740] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.741] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.744] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.744] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.761] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.762] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.784] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.784] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.801] [Tasks] promoting task {Open new 'Sequence view'} to 'Finished'
      [14:45:26.801] [Tasks] promoting task {Open view}

      to 'Finished'
      [14:45:26.801] [Tasks] promoting task

      {Load document: 'test.fa'}

      to 'Finished'
      [14:45:26.801] [Tasks] promoting task

      {Opening view for document: test.fa}

      to 'Finished'
      [14:45:26.850] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.850] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.852] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.852] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.852] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.853] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.900] [Tasks] promoting task

      {Loading documents}

      to 'Finished'
      [14:45:26.900] [Tasks] Unregistering task: Loading documents
      [14:45:26.900] [Tasks] Deleting task: Enable Project
      [14:45:26.900] [Tasks] Deleting task: Enable 'Project' service
      [14:45:26.900] [Tasks] Deleting task: Register 'Project' service
      [14:45:26.900] [Tasks] Deleting task: Register project
      [14:45:26.900] [Tasks] Deleting task: Open project/document
      [14:45:26.900] [Tasks] Deleting task: Adding document to project: /home/bill/test.fa
      [14:45:26.900] [Tasks] Deleting task: Read document: 'test.fa'
      [14:45:26.900] [Tasks] Deleting task: Load 'test.fa'
      [14:45:26.900] [Tasks] Deleting task: Open new 'Sequence view'
      [14:45:26.900] [Tasks] Deleting task: Open view
      [14:45:26.900] [Tasks] Deleting task: Load document: 'test.fa'
      [14:45:26.900] [Tasks] Deleting task: Opening view for document: test.fa
      [14:45:26.900] [Tasks] Deleting task: Loading documents
      [14:45:26.936] [Tasks] Registering new task: Enable 'ProjectView' service
      [14:45:26.941] [Tasks] promoting task

      {Enable 'ProjectView' service} to 'Prepared'
      [14:45:26.941] [Tasks] promoting task {Enable ProjectView} to 'Prepared'
      [14:45:26.941] [Tasks] promoting task {Enable 'ProjectView' service}

      to 'Running'
      [14:45:26.941] [Tasks] promoting task

      {Enable ProjectView} to 'Running'
      [14:45:26.959] [Tasks] promoting task {Enable ProjectView}

      to 'Finished'
      [14:45:26.992] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.992] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.992] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.992] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:26.993] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:26.993] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:27.016] [Tasks] promoting task

      {Enable 'ProjectView' service}

      to 'Finished'
      [14:45:27.016] [Tasks] Unregistering task: Enable 'ProjectView' service
      [14:45:27.016] [Tasks] Deleting task: Enable ProjectView
      [14:45:27.016] [Tasks] Deleting task: Enable 'ProjectView' service
      [14:45:27.052] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:27.052] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:27.052] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:27.052] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:27.053] [Input/Output] DbiPool: Opening DBI. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, factory: SQLiteDbi
      [14:45:27.053] [Input/Output] DbiPool: decreasing reference count. Url: /tmp/ugene_tmp/p5897/session_0.ugenedb, ref-count: 1
      [14:45:27.094] [Tasks] Registering new task: Enable 'External tools support' service
      [14:45:27.195] [Tasks] promoting task

      {Enable 'External tools support' service} to 'Prepared'
      [14:45:27.195] [Tasks] promoting task {Enable 'External tools support' service}

      to 'Running'
      [14:45:27.197] [Tasks] promoting task

      {Enable 'External tools support' service}

      to 'Finished'
      [14:45:27.197] [Tasks] Unregistering task: Enable 'External tools support' service
      [14:45:27.197] [Tasks] Deleting task: Enable 'External tools support' service
      [14:45:27.294] [Tasks] Registering new task: Enable 'DNA export service' service
      [14:45:27.298] [Tasks] promoting task

      {Enable 'DNA export service' service} to 'Prepared'
      [14:45:27.298] [Tasks] promoting task {Enable 'DNA export service' service}

      to 'Running'
      [14:45:27.300] [Tasks] promoting task

      {Enable 'DNA export service' service}

      to 'Finished'
      [14:45:27.300] [Tasks] Unregistering task: Enable 'DNA export service' service
      [14:45:27.300] [Tasks] Deleting task: Enable 'DNA export service' service

      Task tree:
      None
      Stack trace:
      /usr/lib/ugene/libU2Private.so.1(_ZN2U212CrashHandler17runMonitorProcessERK7QString+0x1aa)[0xb6c95b4a]
      /usr/lib/ugene/libU2Private.so.1(_ZN2U212CrashHandler13signalHandlerEiP7siginfoPv+0x146)[0xb6c97796]
      [0xb76f340c]

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            Assignee:
            ggrekhov German Grekhov
            Reporter:
            tao Tao Zhu
            Watchers:
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              Dates

              Created:
              Updated:
              Resolved: