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  1. UGENE
  2. UGENE-1380

Smith-Waterman algorithm works wrong on Linux

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.11.5
    • Component/s: Basic-Nucl, Basic-Protein
    • Labels:
      None
    • Environment:

      Linux

    • Affect Type:
      Userdefined

      Description

      test failed: GUITest_common_scenarios_sw_dialog_test_0001

      Open file test/_common data/smith_waterman2/multi/06/querry.txt
      Copy opened sequence
      Open file test/_common data/smith_waterman2/multi/06/search.txt
      Use menu Actions->Analyze->Find pattern[Smith-Waterman]
      Expected state: Smith-Waterman dialog has appeared
      Use these data:
      Pattern:GTCTTTTCCCCCCGTTCGT
      Algorithm version:SSE2
      Gap open -3.00
      Gap extention: -2.00
      Report result: filter intersections
      Minimal score: 45%
      Save result as: Multiple alignment
      Press align button
      Expected state: 2 alignments added to project
      Found: many alignments added, and length is 1 symbol.

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            Assignee:
            iprotsyuk Ivan Protsyuk
            Reporter:
            vmalin Vladimir Malinovskiy
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              Dates

              Created:
              Updated:
              Resolved: