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  1. UGENE
  2. UGENE-1462

Gene-by-gene approach for genome characteristic worker

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.11.5, 1.12
    • Component/s: Workflow
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Create a workflow element that performs gene-by-gene characteristic of genomes.

      The workflow is the following:
      There are a few genomes there is a list of genes to be found in these genomes. The output is a table with gene names as rows and genomes as columns. Fields of the table are Yes/No items, that say if the gene in the genome.

      The element has the following parameters:
      Identity: identity per cent of genes and genomes
      Annotation name: annotation name to measure identity (blast_result)
      Output file: file to store the report
      Existing file: strategy to handle existing file. In the merge mode column is merged with existing table

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            Assignee:
            vaskin Yura Vaskin
            Reporter:
            vaskin Yura Vaskin
            Watchers:
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              Dates

              Created:
              Updated:
              Resolved: