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  1. UGENE
  2. UGENE-1667

GTFFormat: file with multiple sequence ids are not recognized

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.12
    • Component/s: None
    • Labels:
      None
    • Tests Type:
      Functional/Unit
    • Sprint:
      TEST-2013/08/15, TEST-2013/08/29, TEST-2013/09/05

      Description

      See attached files: fusedChr1, fusedChr2, fusions.gtf. The GTF file has annotation for 2 reference sequences, however annotations only for one sequence (first) are created when file is loaded into UGENE. This logic is wrong since the format allows to have multiple sequence annotations.

        Attachments

        1. fusions.gtf
          3 kB
        2. fusedChr2.fa
          40 kB
        3. fusedChr1.fa
          1 kB

          Activity

            People

            Assignee:
            kokonech Konstantin Okonechnikov (Inactive)
            Reporter:
            kokonech Konstantin Okonechnikov (Inactive)
            Assigned Tester:
            Aleksey Tiunov [X] (Inactive)
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: