UGENE
  1. UGENE
  2. UGENE-1752

Search TFBS with matrices algorithm creates invalid annotation qualifiers

    Details

    • Type: Bug Bug
    • Status: Closed Closed
    • Priority: Major Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.12
    • Component/s: Basic-Nucl
    • Labels:
      None
    • Tests Type:
      Manual scenario
    • Affect Type:
      Userdefined

      Description

      Search TFBS with matrices algorithm creates invalid annotation qualifiers: qualifier name shouldn't contain spaces.
      Steps to reproduce:
      1. Open "human_T1.fa".
      2. Select

      {Analyze->Search TFBS with matrices}

      in the context menu.
      Expected state: "Weight matrix search" dialog appears.
      3. Set the matrix:

      {/data/position_weight_matrix/JASPAR/fungi/MA0265.1.pfm}

      . Click the "Search" button.
      Expected state: some info appears in the dialog's widgets. The "Save as annotations" button is enabled.
      4. Press the "Save as annotations" button.
      Expected state: the "Create annotation" dialog appears.
      5. Click the "Create" button and close the "Weight matrix search" dialog.
      6. Open any annotation, look at qualifiers. There is a "Weight matrix model" qualifier.
      Qualifier name shouldn't contain spaces. It may contains letters, numbers, symbols '-', '_', '/', '*'.

        Issue Links

          Activity

          Hide
          Aleksey Tiunov
          added a comment -

          Fixed at the r. 4176.

          Show
          Aleksey Tiunov
          added a comment - Fixed at the r. 4176.
          Hide
          Yuliya Algaer
          added a comment -

          Reviewed in UGENE-1845

          Show
          Yuliya Algaer
          added a comment - Reviewed in UGENE-1845
          Hide
          Yuliya Algaer
          added a comment -

          Reviewed in UGENE-1845

          Show
          Yuliya Algaer
          added a comment - Reviewed in UGENE-1845

            People

            • Assignee:
              Aleksey Tiunov
              Reporter:
              Aleksey Tiunov
              Assigned Tester:
              Kirill Rasputin
            • Votes:
              0 Vote for this issue
              Watchers:
              1 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: