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  1. UGENE
  2. UGENE-1786

Allow to enter IDs for different databases as recource ID for DAS

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.13
    • Component/s: Basic-Other
    • Labels:
    • Tests Type:
      Manual scenario
    • Affect Type:
      Userdefined

      Description

      {File->Access remote database}

      , database: UniProt (DAS).
      In current state UGENE can work with Swiss-Prot, TrEMBL, UniProt, IPI and UniParc IDs only. It is needed to allow one to use IDs from another databases (e.g. PDB ID).
      There is an online service DASty (http://www.ebi.ac.uk/dasty/index.html). It can use any IDs, do request to the DAS and visualise the result. This service converts the inappropriate IDs with another online service: PICR (http://www.ebi.ac.uk/Tools/picr/).
      It is necessary to imlement similary logic in the UGENE: user enters any ID, UGENE sends a request to the PICR, converts an entered ID into the appropriate to the DAS, then sends a request to the DAS.
      This feature should be tested manually with DASty and PICR service.

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            Assignee:
            atiunov Aleksey Tiunov [X] (Inactive)
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Assigned Tester:
            Vladimir Malinovskiy
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: