Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-206

Clean up fetch-sequence command line option

    XMLWordPrintable

    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.9.2
    • Fix Version/s: 1.9.3
    • Component/s: Basic-Other
    • Labels:
    • Affect Type:
      Userdefined

      Description

      1) Rename 'fetch-sequence' to 'fetch'. "fetch-sequence" can be keeped as deprecated for some time to preserve compatiblity. Reason: fetch-sequence fetches complete resource images, but not sequence only.

      Probably we need additional JIRA issues for some future release not to forget to remove deprecated code;

      2) Make database names used in command line short and case insensitive. E.g. genbank but not "NCBI GenBank (DNA sequence)". Probably we should support both short and long names here.

      Document all available database both in --help & manual

      3) Replace "Nothing has been found" with "Not found" for files content that failed to download

        Attachments

          Activity

            People

            Assignee:
            kokonech Konstantin Okonechnikov
            Reporter:
            mfursov Mikhail Fursov
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: