Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-2241

Import SAM files without headers

    XMLWordPrintable

    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.13
    • Component/s: None
    • Labels:
      None
    • Tests Type:
      Manual scenario
    • Sprint:
      DEV-2013/10/10, DEV-2013/10/17, TEST-2013/10/24

      Description

      The BAM/SAM import in UGENE is based on the header of the files. The header contains information about the references which are in the assembly file. But sometimes SAM files do not contain the header and it is not possible to import them.
      Make UGENE able to import SAM files without headers.

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              ggrekhov German Grekhov
              Reporter:
              ggrekhov German Grekhov
              Assigned Tester:
              Kirill Rasputin
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved:

                  Time Tracking

                  Estimated:
                  Original Estimate - 4 hours Original Estimate - 4 hours
                  4h
                  Remaining:
                  Remaining Estimate - 1 day
                  1d
                  Logged:
                  Time Spent - Not Specified
                  Not Specified