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  1. UGENE
  2. UGENE-227

Add neat command line interface to UGENE Genome Aligner

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.9.3
    • Component/s: NGS
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Most of operations with NGS-data are performed on servers without any GUI thus it is required for a short read aligner to have a command line interface. Using workflow scenario for this task results in performance failing (probably connected to channels I/O ).
      Also some additional options are required (for example Bowtie-like "--time" output option for performance comparison )

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            Assignee:
            kokonech Konstantin Okonechnikov
            Reporter:
            kokonech Konstantin Okonechnikov
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              Dates

              Created:
              Updated:
              Resolved: