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  1. UGENE
  2. UGENE-231

LocalFileIOAdapter::skip() sometimes works incorrectly

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.9.3
    • Component/s: NGS
    • Labels:
    • Affect Type:
      Userdefined

      Description

      When buffer optimization is enabled, call to LocalFileIOAdapter::skip() sometimes skips wrong number of bytes. This can be reproduced by trying to import a BAM file with index (the import task uses the method for random access to the file), e. g. ftp://ugene-quad-ubuntu/data/illumina/BC_cellLinesData/LowPass_DNAseq/BAMs/BT-20_sorted.bam with index ftp://ugene-quad-ubuntu/data/illumina/BC_cellLinesData/LowPass_DNAseq/BAMs/BT-20_sorted.bam.bai

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            Assignee:
            ggrekhov German Grekhov
            Reporter:
            baskanov Anton Baskanov
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              Dates

              Created:
              Updated:
              Resolved: