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  1. UGENE
  2. UGENE-2622

Optimize "Regular expression" pattern search or temporary remove it from UGENE

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    Details

    • Tests Type:
      Manual scenario
    • Sprint:
      DEV-2014/01/30, TEST-2014/02/06, DEV-2014/02/13
    • Affect Type:
      Userdefined

      Description

      Based on a user's story:

      "I need to find in genome regions N of any length. I input N+ as a pattern. It starts a task but it shows 0% for 10 minutes. I think for a 2MB genome it should be very fast."

      Optimize regular expression search. It must find a subsequence in a 2MB sequence (or in human_t1) in terms of minutes or even seconds.

      If the optimization takes a lot of time, as a fast-fix, remove this feature from UGENE because it causes only user questions or irritations. BUT create another issue of feature type that returns this powerful feature back.

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            Assignee:
            iprotsyuk Ivan Protsyuk
            Reporter:
            vaskin Yura Vaskin
            Assigned Tester:
            German Grekhov
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved:

                Time Tracking

                Estimated:
                Original Estimate - 2 days, 4 hours
                2d 4h
                Remaining:
                Remaining Estimate - 2 days, 4 hours
                2d 4h
                Logged:
                Time Spent - Not Specified
                Not Specified