Open cistrome sample. The first wizard will be shown. You will be offered to choose the pipeline and to set the cistrome data dir path. If cistrome data dir is found in the default place ("%datadir%/cistrome"), the lineedit is empty, but all tools can find their data.
In this case lineedit should contain path to the default place.
Parameters, that can be checked in the wizard:
CEAS: gene annotation table;
Conservation plot: assembly version;
SeqPos: genome assembly version;
Peak2Gene: genome file