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  1. UGENE
  2. UGENE-2884

Tuxedo Full: modify "-u/--multi-read-correct " of Cuffdiff

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.13.1
    • Fix Version/s: 1.13.2
    • Component/s: Workflow
    • Labels:
      None
    • Tests Type:
      Manual scenario
    • Affect Type:
      Userdefined

      Description

      According to the protocol described the Tuxedo paper (Trapnell et al.), the value is set to true. So, it must be modified in the UGENE workflows as well.

      Note: do not modify the default value in the Cuffdiff element, only Full Tuxedo workflow must be modified: with single-end reads and with paired-end reads.

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            Assignee:
            atiunov Aleksey Tiunov [X] (Inactive)
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Eugenia Pushkova [X] (Inactive)
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: