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  1. UGENE
  2. UGENE-3013

Mistakes in Remote BLAST chapter in the documentation

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: infrastructure
    • Component/s: Documentation
    • Labels:
      None
    • Tests Type:
      Untestable
    • Sprint:
      DEV-05/06/2014

      Description

      Incorrect descriptions in the Remote BLAST chapter (https://ugene.unipro.ru/wiki/display/UUOUM/Remote+BLAST ):

      1) Please review the whole chapter and fix, at least, the following:
      1.1) "The Remote BLAST plugin provides the capability to annotate sequences with information stored in remote databases." - there is only one remote database - NCBI BLAST (http://blast.ncbi.nlm.nih.gov/Blast.cgi)
      1.2) "Search timeout — sometimes a database doesn’t respond, therefore you need to re-wait for the response. This option sets the time that will be spent for re-appeal to the database. Note that in case of long sequences time for request preparation increases and the search takes several minutes."
      In truth, the search timeout parameter means that the remote request task is terminated if the timeout is reached.

      2) Also, please check (and fix, if required) descriptions of the remote BLAST parameters in UGENE UI.

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Denis Kandrov
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: