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  1. UGENE
  2. UGENE-3113

gz.fa input files for building indeces for short reads aligners

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 1.13.3
    • Fix Version/s: 1.14.1
    • Component/s: None
    • Labels:
      None
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-03/07/2014, DEV-10/07/2014, DEV-17/07/2014

      Description

      When I try to use _common_data\fasta\titin.fa.gz as input file for Bowtie2 build index, an error occurs:

      [ERROR][12:45] Task {Dna assembly task} finished with error: Subtask {DnaAssemblyMultiTask} is failed: Subtask {DnaAssemblyToRefTask} is failed: Subtask {Building genome aligner's index} is failed: Too large sequence, unsupported file format or empty reference in E:/SVN/UGENE/test/_common_data/fasta/titin.fa.gz
      

      UGENE must support all sequence formats and also zipped sequences, so that must be fixed.

      Please verify the same issue for other short reads aligners available in the build index dialog.

      The issue was inspired by https://www.biostars.org/p/104603/

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            Assignee:
            epushkova Eugenia Pushkova [X] (Inactive)
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Artyom Savchenko
            Watchers:
            2 Start watching this issue

              Dates

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              Updated:
              Resolved:

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