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  1. UGENE
  2. UGENE-3233

Recalculate regions in qualifiers when sequence is modified

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.13.3
    • Fix Version/s: 1.16.2, 1.17
    • Component/s: None
    • Story Points:
      5
    • Sprint:
      DEV-06/05/2015
    • Affect Type:
      Userdefined

      Description

      Some qualifiers of annotations contain regions. There was a request to modify the qualifiers when a sequence is changed, for example, a nucleotide is inserted or deleted.

      Examples of qualifiers see below:

      On the tRNA and tmRNA notes. the tRNA feature has a very important qualifier called anticodon

      which is something like this
      /anticodon=(pos:678..680,aa:Leu,seq:taa)
      or
      /anticodon=(pos:complement(678..680),aa:Leu,seq:taa)

      also tmRNA has a very important qualifier called tag_peptide which goes ike this

      /tag_peptide="116271..116303"
      or
      /tag_peptide="complement(116271..116303)"

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              Assignee:
              iprotsyuk Ivan Protsyuk
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Artyom Savchenko
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: