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  1. UGENE
  2. UGENE-3238

Load sequences from NCBI

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.13.3
    • Fix Version/s: 1.15
    • Component/s: None
    • Labels:
      None
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-28/08/2014, DEV-28/08/2015, DEV-11/09/2016, DEV-18/09/2014, DEV-25/09/2014, DEV-02/10/2014, DEV-09/10/2014, DEV-16/10/2014, DEV-23/10/2014, DEV-06/11/2014, DEV-13/11/2014, DEV-20/11/2014
    • Affect Type:
      Userdefined

      Description

      Sequences on NCBI are often stored in FASTA files only, and corresponding annotations are stored in GenBank files (e.g. NC_017775). So current fetch data dialog is not really handy.

      For example, the solution may be to add "FASTA" and "GenBank" checkboxes to the dialog.

      Another improvement is to load the list of IDs from a file (one ID at a line).
      BTW, the workflow element must be modified correspondingly.

      The issue was inspired by https://www.biostars.org/p/107118/

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            Assignee:
            atiunov Aleksey Tiunov [X] (Inactive)
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Ivan Protsyuk
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved:

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