Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-3256

Create workflow elements for tools that align short reads

    XMLWordPrintable

    Details

    • Sprint:
      DEV-31/06/2014, DEV-14/08/2014, DEV-21/08/2014, DEV-11/09/2016, DEV-18/09/2014, DEV-25/09/2014, DEV-02/10/2014, DEV-09/10/2014
    • Affect Type:
      Userdefined

      Description

      All tools that align sequencing reads must have workflow elements:

      • BWA
      • BWA-SW (this probably already have the element)
      • Bowtie
      • Bowtie2
      • UGENE Genome Aligner

      Corresponding elements for building indexes must also be added.

        Attachments

          Issue Links

          is blocked by

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-2106 Add UGENE genome aligner element to WD

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3285 Add the BWA workflow element into UGENE Workflow Designer

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3355 Add the "Build BWA index" workflow element into UGENE Workflow Designer

          • Major - Major loss of function.
          • Closed
          relates to

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3576 Create relations for ports in WD

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              artyom_s Artyom Savchenko
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Yuliya Algaer
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: