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  1. UGENE
  2. UGENE-3383

Convert PDB to STOCKHOLM

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Trivial
    • Resolution: Won't Fix
    • Affects Version/s: 1.14
    • Fix Version/s: None
    • Component/s: Basic-Other, Workflow
    • Labels:
    • Affect Type:
      Userdefined

      Description

      I saw a request on biostars: https://www.biostars.org/p/109442/
      And tried to do it in UGENE: "Read Sequence > File Format Conversion".
      The result was "The formats are not compatible: pdb and stockholm".

      Apparently, such conversion makes sense, so it should be added to UGENE.
      Also, take into account the details of the request:

      The goal is to gain a sequence with information of missing residues. Tool shoud be insensitive to errors in PDB numberings or insertion codes or alternate locations.

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            Assignee:
            Unassigned
            Reporter:
            oigl Olga Golosova
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              Created:
              Updated:
              Resolved: