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  1. UGENE
  2. UGENE-3547

Integrate other variant calling workflows

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    • Affect Type:
      Userdefined

      Description

      This request is based on a comment from the "Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses" paper reviewer.

      This would be more beneficial for the biologist and also for easy adaption if authors can Include ready to use best practices workflows. For example:
      1. Variant calling work flows for germline and somatic mutations based on additional tools such as GATK, varscan2, FreeBayes for Exome Sequencing.

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          relates to

          New Feature - A new feature of the product, which has yet to be developed. UGENE-3550 Integrate structural variants analysis workflow

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. UGENE-3548 Integrate other RNASeq differential expression workflow

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Closed

          New Feature - A new feature of the product, which has yet to be developed. UGENE-3549 Integrate workflow for cSNPs

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Closed

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              Assignee:
              Unassigned
              Reporter:
              oigl Olga Golosova
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