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  1. UGENE
  2. UGENE-3574

Automatic BAM/SAM sorting and indexing for NGS elements

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Minor
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Workflow
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Currently in the raw NGS pipelines there are a lot of steps for sorting/indexing/converting of BAM/SAM files. These steps can be encapsulated inside elements.
      Improve NGS elements (rmdup, bam merge, Filter BAM) so that they understand input format and perform automatic converting/sorting/indexing.

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            Assignee:
            Unassigned
            Reporter:
            vaskin Yura Vaskin
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              Created:
              Updated:
              Resolved: