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  1. UGENE
  2. UGENE-3677

Primer3 can not find results on circular junction region

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.15
    • Component/s: Basic-Nucl
    • Labels:
    • Tests Type:
      Functional/Unit
    • Sprint:
      DEV-30/10/2014, DEV-06/11/2014, DEV-13/11/2014, DEV-20/11/2014
    • Affect Type:
      Userdefined

      Description

      Scenario 1:

      1. Open sequence
      2. Open CV
      3. Select the region that contain circular junction
      4. Launch Primer3 on the selected region
        Current state: results are found only at the beginning of the sequence
        Expected state:
      • sequence is circular - results should be equal to the results you obtain from Primer3 if you create the sequence from that region and launch Primer3 on the whole sequence.
      • sequence is linear - there should be top results from both regions

      Scenario 2:

      1. Open sequence
      2. Open CV
      3. Select the region that contain circular junction like that: let the region from the sequence start be very small ~20pt
        Current state: there is an error

        INCLUDED_REGION length'

        Expected state: see the previous scenario.

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            People

            Assignee:
            epushkova Eugenia Pushkova [X] (Inactive)
            Reporter:
            epushkova Eugenia Pushkova [X] (Inactive)
            Assigned Tester:
            Vladimir Malinovskiy
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved:

                Time Tracking

                Estimated:
                Original Estimate - 1 day
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                Remaining Estimate - 1 day
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