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  1. UGENE
  2. UGENE-3718

Tophat: wrong Bowtie path is detected

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.15.1, 1.16
    • Component/s: Workflow
    • Labels:
    • Tests Type:
      Untestable
    • Sprint:
      DEV-04/12/2014
    • Affect Type:
      Userdefined

      Description

      0. Install Bowtie 0.12.7 and add it to PATH.
      1. Set up the UGENE external tool path for Bowtie 1.0.0 or greater (but < 2.0).
      2. Open WD.
      3. Open the Tuxedo sample.
      4. Set up the input data from the test directory: wbc, lymph FASTQ files and chr6 Bowtie1 index.
      5. Run the workflow.
      Actual: Tophat shows the message about too low Bowtie version.

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            People

            Assignee:
            epushkova Eugenia Pushkova [X] (Inactive)
            Reporter:
            ggrekhov German Grekhov
            Assigned Tester:
            Vladimir Malinovskiy
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved:

                Time Tracking

                Estimated:
                Original Estimate - 4 hours
                4h
                Remaining:
                Remaining Estimate - 4 hours
                4h
                Logged:
                Time Spent - Not Specified
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