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  1. UGENE
  2. UGENE-3738

CAP3 result file cannot be opened in Assembly Browser

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.14.2
    • Fix Version/s: 1.15.1, 1.16
    • Component/s: NGS
    • Labels:
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-04/12/2014
    • Affect Type:
      Userdefined

      Description

      Scenario to reproduce:

      1. Select {DNA Assembly -> Contig assembly with CAP3}

        menu item in the main menu.

      2. Set sequences "_common_data/scf/Sequence A.scf" and "_common_data/scf/Sequence B.scf" as input, set any valid output path and run the task.
        Expected state: user is asked to select the view.
      3. Select "Open in Assembly Browser with ACE importer format" and import the assembly anywhere.
        Expected state: the assembly is successfully imported.
        Current state: the assembly is not imported, there is an error in the log: Task {CAP3 run and open result task}

        finished with error:
        "Subtask

        {Loading documents}

        is failed: Subtask

        {Opening view for document: vxzv.ace}

        is failed: Subtask

        {Adding document to project: vxzv.ace}

        is failed: Subtask

        {ACE file import: vxzv.ace}

        is failed: Subtask

        {Convert ACE to UGENE database (vxzv.ace)}

        is failed: Unexpected end of file. Document was removed"

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            People

            Assignee:
            atiunov Aleksey Tiunov [X] (Inactive)
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Assigned Tester:
            Vladimir Malinovskiy
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved:

                Time Tracking

                Estimated:
                Original Estimate - 3 hours
                3h
                Remaining:
                Remaining Estimate - 3 hours
                3h
                Logged:
                Time Spent - Not Specified
                Not Specified