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  1. UGENE
  2. UGENE-3823

Verify tests for raw NGS worfklow samples

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.15
    • Fix Version/s: 1.15.1
    • Component/s: None
    • Labels:
      None
    • Environment:

      Windows

    • Sprint:
      DEV-11/12/2014
    • Affect Type:
      Technical

      Description

      I tried to launch workflow sample "Raw ChIP-seq processing" (with single tags) with data specified in the "test\cmdline\common\workflow_samples\raw_ngs\test_0001" test.

      I specified:
      1) FASTQ input:
      test_common_data\cmdline\workflow_samples\raw_ngs \reads_1.fastq
      2) Reference sequence:
      test_common_data\cmdline\workflow_samples\raw_ngs\bowtie_index\test.fa
      3) Output directory: "out"

      The workflow ended with a BWA-MEM error: it exited with code 1.

      Therefore, it seems that the workflow does not work.
      The question is why the test didn't show this?
      1) Is there a problem in the test?
      2) Is there a problem in the test system?
      3) Am I launched the workflow incorrectly?

      The test was launched on Windows OS.

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              Assignee:
              artyom_s Artyom Savchenko
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Yuliya Algaer
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved:

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