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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Cannot Reproduce
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Affects Version/s: 1.15
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Fix Version/s: None
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Component/s: Basic-Nucl
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Sprint:DEV-12/02/2015, DEV-05/03/2015
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Affect Type:Userdefined
This is a user request. The procedure was:
My file is the reference genome of Plasmodium falciparum (PlasmoDB-10.0_Pfalciparum3D7_Genome.fasta )from the website plasmoDB (http://plasmodb.org/common/downloads/release-10.0/Pfalciparum3D7/fasta/data/ ) I made a fusion of all chromosomes and organelle (mitochondrion and Apicoplast). Then I run the repeat research. Finds repeats settings were Windows size = 50pb Minimum Identity per window = 100% No minimum distance between repeats No maximum distance between repeats Region to process whole sequence Save Annotations to new table group name = auto Annotation name = repeat_unit And no items have been selected in the "advanced" tab. Unfortunately, I didn’t get the crash report so I didn’t send you this log file. I will try to find it.
The result was:
But I was not able to export the result. I get a file ( 188 mb). It was hard to save it. It takes a long time but I managed it. But when I try to export the annotation with all my repeat (742832 repeat) It doesn’t work and the software crashed… When I check the memory of my computer only 4.95 Go was used (I have more than 30 Go) and under 5% of my UC are used
The memory issues must be solved and the export of annotations must work properly.
- relates to
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UGENE-4167 Optimize UGENE for opening GenBank files with ~1 million annotations
- Closed