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  1. UGENE
  2. UGENE-3904

SAFE_POINT is triggered on removing columns in msa

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    Details

    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-15/01/2015
    • Affect Type:
      Userdefined

      Description

      Scenario to reproduce:

      1. Open "data/samples/CLUSTALW/COI.aln".
      2. Select the first sequence in the names area.
      3. Set focus to the sequence area, click space.
        Expected state: the first sequence is shifted.
      4. Call context menu, select {Edit -> Remove column of gaps...}

        menu item.

      5. Select the second option (remove by percentage) and accept the dialog.
        Expected state: the first sequence is removed, there are no errors in the log; if the first sequence was reference, the reference is unset.
        Current state: the first sequence is removed, there are errors in the log: "Trying to recover from error: No row ID '1' in an alignment! at src/gobjects/MAlignmentObject.cpp:444".

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              Assignee:
              artyom_s Artyom Savchenko
              Reporter:
              atiunov Aleksey Tiunov [X] (Inactive)
              Assigned Tester:
              Kirill Rasputin
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved:

                  Time Tracking

                  Estimated:
                  Original Estimate - 3 hours
                  3h
                  Remaining:
                  Remaining Estimate - 3 hours
                  3h
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                  Time Spent - Not Specified
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