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  1. UGENE
  2. UGENE-3967

SPAdes error: exception caught while parsing YAML file

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.15.1
    • Fix Version/s: 1.16
    • Component/s: None
    • Labels:
    • Tests Type:
      GUI automatic
    • Affect Type:
      Userdefined

      Description

      See http://ugene.unipro.ru/forum/YaBB.pl?num=1422521083/

      The error occurs on some data:

      [ERROR][23:45] Spades: == Error == exception caught while parsing YAML file (/Biofizyka/UGENE/Bakteriofagi/JD/R15011/datasets.yaml):
[ERROR][23:45] Task {GenomeAssemblyMultiTask} finished with error: Subtask {GenomeAssemblyTask} is failed: Subtask {SPAdes tool} is failed: SPAdes tool exited with code 1

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            Assignee:
            vaskin Yura Vaskin
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Vladimir Malinovskiy
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: