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  1. UGENE
  2. UGENE-4005

Search region and auto-annotations

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    Details

    • Sprint:
      DEV-37-2, DEV-37-3, DEV-37-4, DEV-37-5, DEV-37-RELEASE, DEV-38-1, DEV-38-2, DEV-38-3, DEV-38-4, DEV-38-5, DEV-38-RELEASE, DEV-39-1
    • Affect Type:
      Userdefined

      Description

      "Find ORFs" task generates auto annotations that can be hidden or shown at any time, even after UGENE restarts. Currently, the algorithm settings are stored in the settings file, these settings are used for any sequence. Among other settings a region to search in is stored. So if ORFs were searched for a whole short sequence, ORFs on the big sequence will be searched on the saved region, not on the whole sequence.
      Any mechanism to define correct region to search should be implemented.
      See related issues for additional info.

        Attachments

          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-3529 ORFs search, the region and switch off of the auto-annotating function

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-3920 ORF search task ignores region to search in

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3267 Specifying a region when searching for restriction sites

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

            Activity

              People

              Assignee:
              kir Kirill Rasputin
              Reporter:
              atiunov Aleksey Tiunov [X] (Inactive)
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: