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  1. UGENE
  2. UGENE-4035

Bootstrap values are not displayed when PhyML is used

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    Details

    • Story Points:
      3
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-26/02/2015, DEV-05/03/2015, DEV-12/03/2015, DEV-20/03/2015, DEV-22/09/2015
    • Affect Type:
      Userdefined

      Description

      PhyML bootstrap tree contains information about branches lengths and bootstrap values, but UGENE does not support this variation of NEWICK format.
      It is necessary to do the following:
      1. Add support of NEWICK with bootstrap values and branches lengths
      2. Add visualiztion of bootstrap values near nodes. Corresponing option "Show bootstrap values" must be added to option panel.

      A user request:

      When we made tree using PhyML options for Maximum likelihood, how can we get bootstrap values on each branch. we did chose perform bootstrap option. It always show some value which looks like distance values.
      

        Attachments

        1. Image 1.jpg
          204 kB
          Artyom Savchenko
        2. Screen Shot 2015-04-30 at 14.35.31.png
          254 kB
          Olga Golosova

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              Assignee:
              artyom_s Artyom Savchenko
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Eugenia Pushkova [X] (Inactive)
              Watchers:
              4 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved:

                  Time Tracking

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                  Original Estimate - 4 hours
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                  Remaining:
                  Remaining Estimate - 4 hours
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