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  1. UGENE
  2. UGENE-4218

Read-write annotations in WD

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.16.2, 1.17
    • Component/s: Workflow
    • Labels:
      None
    • Story Points:
      5
    • Sprint:
      DEV-06/05/2015
    • Affect Type:
      Userdefined

      Description

      1. Create the following workflow: Read annotations --> Write annotations
      2. Set output format to BED
      3. Set the input file in BED format (smt like 'chr1 10 20')
      4. Run the workflow
        Current state: 'chr1' mark is lost, output file is 'Annotations 10 20'
        Expected state: all information should be saved

      This is significant for BED and GFF formats. Also check other annotations formats.

        Attachments

          Issue Links

          relates to

          Task - A task that needs to be done. UGENE-4319 Test issues 1520, 3839, 4131, 4218

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-4381 "Read Annotations" > "Write Annotations" for "Treatment_tags.bed" file

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-3653 Auto-relation between sequence and corresponding annotations

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-4380 Use annotations object name from input when writing annotations to a shared db

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              epushkova Eugenia Pushkova [X] (Inactive)
              Reporter:
              epushkova Eugenia Pushkova [X] (Inactive)
              Assigned Tester:
              Ivan Protsyuk
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: