FASTQ files can be successfully assembled using CLC bio, but SPAdes returned an error (on the same computer).
I have change source fastq files (different phage) and after successful assembly using clc I tried to do the same with spades,
log below:
Quote:
[ERROR][11:11] Spades: == Error == system call for: "['/Volumes/Unipro UGENE 1.16.0/Unipro UGENE.app/Contents/MacOS/tools/SPAdes-3.1.1/bin/hammer', '/Biofizyka/UGENE/Bakteriofagi/JD/ZK1_01/corrected/configs/config.info']" finished abnormally, err code: -6
[ERROR][11:11] == Error == system call for: "['/Volumes/Unipro UGENE 1.16.0/Unipro UGENE.app/Contents/MacOS/tools/SPAdes-3.1.1/bin/hammer', '/Biofizyka/UGENE/Bakteriofagi/JD/ZK1_01/corrected/configs/config.info']" finished abnormally, err code: -6
[ERROR][11:12] TaskUnknown macro: {GenomeAssemblyMultiTask}finished with error: Subtask
Unknown macro: {GenomeAssemblyTask}is failed: Subtask
Unknown macro: {SPAdes tool}is failed: SPAdes tool exited with code 1
Investigate other de novo assemblers for the data. For example:
- SOAPdenovo
- MIRA
- relates to
-
UGENE-371 Integrate into UGENE another de novo assembly tool for short reads
- Closed